Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31] 623 sequences; 41,098,534 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq34 176 1e-38 seq18 161 2e-34 seq5 138 3e-27 seq3 89.7 1e-12 >seq34 Length=376069 Score = 176 bits (194), Expect = 1e-38 Identities = 172/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| || | || || | ||||||||||||||| ||||||||||| || || | |||||| Sbjct 166310 ACGGAGACGTAACACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGT 166369 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || || ||||| || |||||||| | || |||||||| || |||| ||| Sbjct 166370 GCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGAATTCC 166429 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||| |||||||| || || || ||||||||||| || ||||||||||| Sbjct 166430 CTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCAACCTCGAG 166489 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || |||||||| ||||| || || | |||||| Sbjct 166490 GGTGATAGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 166531 >seq18 Length=877782 Score = 161 bits (178), Expect = 2e-34 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| | || | ||| || |||||||||||||| || || | ||| || Sbjct 575355 ACGAAGACGAAGGACCAAATGTAAAGTTGATTCTTTTTGGATGTTGTAGTCGGAAAGAGT 575414 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || || ||||| || || |||||||| |||||||||||||| || | || Sbjct 575415 TCGGCCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGGTCAGGTGGGATACC 575474 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 || ||||| || ||||| ||||| || |||||||| || || |||||||| | Sbjct 575475 CTCTTTGTCTTGAATCTTAGCCTTCACATTGTCGATGGTATCCGACGACTCAACCTCTAA 575534 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| |||||||| ||||||||||| || || | |||||| Sbjct 575535 AGTGATTGTCTTTCCGGTGAGAGTCTTGACGAAGATCTGCAT 575576 Score = 158 bits (174), Expect = 3e-33 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||||||||| || || | || ||||| ||||| || ||||||||||| || | ||||| Sbjct 575583 ACGAAGTCTGAGAACCAAATGGAGAGTAGACTCCTTCTGGATGTTATAGTCTGAGAGGGT 575642 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || || ||||| || ||||| || | ||||||||||| || || | || Sbjct 575643 ACGACCATCCTCAAGTTGCTTTCCGGCGAAAATCAAACGTTGTTGGTCGGGTGGGATGCC 575702 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 || ||||| || ||||| ||| ||||| ||||| || ||||| |||||||||||| Sbjct 575703 CTCTTTGTCTTGAATCTTGGCTTTGACGTTATCGATAGTATCAGAAGATTCAACCTCGAG 575762 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102 ||||| |||||||| ||||| ||||| || Sbjct 575763 GGTGATGGTCTTTCCGGTGAGGGTCTTAAC 575792 Score = 136 bits (150), Expect = 9e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| || ||||| |||||||| || || ||||| || || | ||||| Sbjct 575867 ACGAAGGCGGAGGACGAGATGAAGTGTGGACTCCTTCTGAATGTTGTAGTCTGAGAGGGT 575926 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| || |||||||||||||| || | || ||||| || ||||||| || Sbjct 575927 GCGACCATCTTCAAGTTGCTTGCCTGCGAAAATCAAACGCTGTTGATCGGGAGGAATCCC 575986 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||| |||||||| ||| || || || || ||||| | || ||||| || Sbjct 575987 CTCCTTGTCTTGGATCTTGGCTTTGACATTGTCAATAGTGTCGCTGGACTCGACCTCAAG 576046 Query 211073 AGTGATCGTCTTTCCCGT 211090 ||||| |||||||| || Sbjct 576047 GGTGATGGTCTTTCCAGT 576064 >seq5 Length=1928780 Score = 138 bits (152), Expect = 3e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 ||||||||||| ||||| | ||| || | ||| || || || ||||| || |||||||| Sbjct 1275125 TTTTGGATGTTGTAATCTGAAAGAGTACGTCCGTCCTCAAGTTGCTTTCCAGCGAAGATC 1275184 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | |||||||| || || |||| ||| |||||||| |||||||| || || || ||| Sbjct 1275185 AAACGTTGTTGATCGGGGGGAATTCCCTCCTTGTCTTGGATCTTAGCCTTAACATTGTCG 1275244 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || ||||||||| || ||||| || ||||| ||||| ||||| || ||||| || || Sbjct 1275245 ATAGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 1275303 >seq3 Length=2126074 Score = 89.7 bits (98), Expect = 1e-12 Identities = 190/280 (68%), Gaps = 4/280 (1%) Strand=Plus/Plus Query 178088 CCAAAGTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCATT 178147 |||| |||||||||||||||||| || ||||||||||| ||||| || || Sbjct 691530 CCAAGGTTCTTTTGGTTGCTCTTCTTGTTGCATGCATCTTTGTAAAGCATGAAAGGATTT 691589 Query 178148 CCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTT 178207 || || | ||||||| | ||||| | ||| |||| || || || |||||| Sbjct 691590 CCGGTTTCGGTTTGAGCCTCAAGAATAGAGTACCAGAGCTTTTGAGCCTTGATAGTCTTG 691649 Query 178208 TTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACA 178267 | |||||| | || || || | | |||||| |||| || ||| ||||| ||| Sbjct 691650 CGACCCTTTCCTGCCTTTTCATAACTCTCGTAGAGGGCCTCAAACTCCTCGCCATAAACA 691709 Query 178268 TCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACC-GTCTTCCTTC-A 178325 || | | ||| || ||||||||||| | ||| |||| | || |||| ||| | Sbjct 691710 TCTGCCAAACCAGGGCATTCATTGGGGCACATAAGAGTCCATTCTCCATTCTT--TTCGA 691767 Query 178326 CTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365 | || |||||||| | |||| |||| | ||||||||| Sbjct 691768 CACGCTTCATGAACAAATCAGGAATCCACAAGGCATAGAA 691807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159142747431395