Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31]
623 sequences; 41,098,534 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq34 176 1e-38
seq18 161 2e-34
seq5 138 3e-27
seq3 89.7 1e-12
>seq34
Length=376069
Score = 176 bits (194), Expect = 1e-38
Identities = 172/222 (77%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
||| || | || || | ||||||||||||||| ||||||||||| || || | ||||||
Sbjct 166310 ACGGAGACGTAACACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGT 166369
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| ||||| || || ||||| || |||||||| | || |||||||| || |||| |||
Sbjct 166370 GCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGAATTCC 166429
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
|||||||| |||||||| || || || ||||||||||| || |||||||||||
Sbjct 166430 CTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCAACCTCGAG 166489
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| || || |||||||| ||||| || || | ||||||
Sbjct 166490 GGTGATAGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 166531
>seq18
Length=877782
Score = 161 bits (178), Expect = 2e-34
Identities = 169/222 (76%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | ||||| | || | ||| || |||||||||||||| || || | ||| ||
Sbjct 575355 ACGAAGACGAAGGACCAAATGTAAAGTTGATTCTTTTTGGATGTTGTAGTCGGAAAGAGT 575414
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| ||||| || || ||||| || || |||||||| |||||||||||||| || | ||
Sbjct 575415 TCGGCCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGGTCAGGTGGGATACC 575474
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
|| ||||| || ||||| ||||| || |||||||| || || |||||||| |
Sbjct 575475 CTCTTTGTCTTGAATCTTAGCCTTCACATTGTCGATGGTATCCGACGACTCAACCTCTAA 575534
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|||||| |||||||| ||||||||||| || || | ||||||
Sbjct 575535 AGTGATTGTCTTTCCGGTGAGAGTCTTGACGAAGATCTGCAT 575576
Score = 158 bits (174), Expect = 3e-33
Identities = 161/210 (77%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
||||||||| || || | || ||||| ||||| || ||||||||||| || | |||||
Sbjct 575583 ACGAAGTCTGAGAACCAAATGGAGAGTAGACTCCTTCTGGATGTTATAGTCTGAGAGGGT 575642
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| ||||| || || ||||| || ||||| || | ||||||||||| || || | ||
Sbjct 575643 ACGACCATCCTCAAGTTGCTTTCCGGCGAAAATCAAACGTTGTTGGTCGGGTGGGATGCC 575702
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
|| ||||| || ||||| ||| ||||| ||||| || ||||| ||||||||||||
Sbjct 575703 CTCTTTGTCTTGAATCTTGGCTTTGACGTTATCGATAGTATCAGAAGATTCAACCTCGAG 575762
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102
||||| |||||||| ||||| ||||| ||
Sbjct 575763 GGTGATGGTCTTTCCGGTGAGGGTCTTAAC 575792
Score = 136 bits (150), Expect = 9e-27
Identities = 149/198 (75%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | ||||| || ||||| |||||||| || || ||||| || || | |||||
Sbjct 575867 ACGAAGGCGGAGGACGAGATGAAGTGTGGACTCCTTCTGAATGTTGTAGTCTGAGAGGGT 575926
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| |||||||| || |||||||||||||| || | || ||||| || ||||||| ||
Sbjct 575927 GCGACCATCTTCAAGTTGCTTGCCTGCGAAAATCAAACGCTGTTGATCGGGAGGAATCCC 575986
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
|||||||| |||||||| ||| || || || || ||||| | || ||||| ||
Sbjct 575987 CTCCTTGTCTTGGATCTTGGCTTTGACATTGTCAATAGTGTCGCTGGACTCGACCTCAAG 576046
Query 211073 AGTGATCGTCTTTCCCGT 211090
||||| |||||||| ||
Sbjct 576047 GGTGATGGTCTTTCCAGT 576064
>seq5
Length=1928780
Score = 138 bits (152), Expect = 3e-27
Identities = 138/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986
||||||||||| ||||| | ||| || | ||| || || || ||||| || ||||||||
Sbjct 1275125 TTTTGGATGTTGTAATCTGAAAGAGTACGTCCGTCCTCAAGTTGCTTTCCAGCGAAGATC 1275184
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
| |||||||| || || |||| ||| |||||||| |||||||| || || || |||
Sbjct 1275185 AAACGTTGTTGATCGGGGGGAATTCCCTCCTTGTCTTGGATCTTAGCCTTAACATTGTCG 1275244
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
|| ||||||||| || ||||| || ||||| ||||| ||||| || ||||| || ||
Sbjct 1275245 ATAGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 1275303
>seq3
Length=2126074
Score = 89.7 bits (98), Expect = 1e-12
Identities = 190/280 (68%), Gaps = 4/280 (1%)
Strand=Plus/Plus
Query 178088 CCAAAGTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCATT 178147
|||| |||||||||||||||||| || ||||||||||| ||||| || ||
Sbjct 691530 CCAAGGTTCTTTTGGTTGCTCTTCTTGTTGCATGCATCTTTGTAAAGCATGAAAGGATTT 691589
Query 178148 CCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTT 178207
|| || | ||||||| | ||||| | ||| |||| || || || ||||||
Sbjct 691590 CCGGTTTCGGTTTGAGCCTCAAGAATAGAGTACCAGAGCTTTTGAGCCTTGATAGTCTTG 691649
Query 178208 TTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACA 178267
| |||||| | || || || | | |||||| |||| || ||| ||||| |||
Sbjct 691650 CGACCCTTTCCTGCCTTTTCATAACTCTCGTAGAGGGCCTCAAACTCCTCGCCATAAACA 691709
Query 178268 TCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACC-GTCTTCCTTC-A 178325
|| | | ||| || ||||||||||| | ||| |||| | || |||| ||| |
Sbjct 691710 TCTGCCAAACCAGGGCATTCATTGGGGCACATAAGAGTCCATTCTCCATTCTT--TTCGA 691767
Query 178326 CTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365
| || |||||||| | |||| |||| | |||||||||
Sbjct 691768 CACGCTTCATGAACAAATCAGGAATCCACAAGGCATAGAA 691807
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159142747431395
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |