Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31]
623 sequences; 41,098,534 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq34 118 7e-22
seq18 95.1 8e-15
seq5 93.3 3e-14
>seq34
Length=376069
Score = 118 bits (130), Expect = 7e-22
Identities = 156/214 (73%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||||||||||| ||||| ||||| ||||| ||||| || ||
Sbjct 166531 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAAACTATCACCCTCGAGGTTGAGTCTTCG 166472
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | || | || || ||||| || || | || || || ||
Sbjct 166471 GACACCATCGACAATGTCAAGGC-CAAGATCCAAGACAAGGAGGGAATTCCACCCGACCA 166413
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| || || || ||||| || ||||| || || | ||||| | ||| |||||
Sbjct 166412 ACAGCGATTGATCTTCGCCGGAAAGCAACTCGAGGATGGCCGCACCCTTTCCGACTACAA 166353
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823
||| ||||| |||||||| | || || || |||
Sbjct 166352 CATCCAAAAGGAGTCCACTCTTCACTTGGTGTTA 166319
>seq18
Length=877782
Score = 95.1 bits (104), Expect = 8e-15
Identities = 131/181 (72%), Gaps = 2/181 (1%)
Strand=Plus/Minus
Query 23635 ACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAAAACA 23693
|| ||||| || ||||| || || || || |||| |||||| |||| ||| | ||| |
Sbjct 576064 ACTGGAAAGACCATCACCCTTGAGGTCGAGTCCAGCGACACTATTGACAATGTCAAAGCC 576005
Query 23694 AAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAA 23753
|| | | ||||| || || | || || |||||||||||||| || || || |||||
Sbjct 576004 AAGA-TCCAAGACAAGGAGGGGATTCCTCCCGATCAACAGCGTTTGATTTTCGCAGGCAA 575946
Query 23754 ACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACA 23813
||||| ||||| | ||||| | || |||||||| || || ||||||||| | ||
Sbjct 575945 GCAACTTGAAGATGGTCGCACCCTCTCAGACTACAACATTCAGAAGGAGTCCACACTTCA 575886
Query 23814 T 23814
|
Sbjct 575885 T 575885
>seq5
Length=1928780
Score = 93.3 bits (102), Expect = 3e-14
Identities = 130/180 (72%), Gaps = 2/180 (1%)
Strand=Plus/Minus
Query 23620 TTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTT 23679
||||| || ||||| ||||| || || ||||| || || || || ||| | |||||| |
Sbjct 1275303 TTCGTCAAGACCCTTACGGGCAAGACCATCACCCTTGAGGTCGAGTCCTCTGACACTATC 1275244
Query 23680 GA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTT 23738
|| ||| |||| | || | | ||||| || || | || || |||||||| |||||
Sbjct 1275243 GACAATGTTAAGGCTAAGA-TCCAAGACAAGGAGGGAATTCCCCCCGATCAACAACGTTT 1275185
Query 23739 AATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAA 23798
|| || || || || ||||| || |||| ||| ||| | ||||||||||| |||||
Sbjct 1275184 GATCTTCGCTGGAAAGCAACTTGAGGACGGACGTACTCTTTCAGATTACAACATCCAAAA 1275125
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338007033556484
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |