Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31]
623 sequences; 41,098,534 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq18 205 2e-47
seq34 196 1e-44
seq5 156 9e-33
seq9 113 9e-20
>seq18
Length=877782
Score = 205 bits (226), Expect = 2e-47
Identities = 182/228 (80%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || ||||| |||| |||||| || ||||||||||||||||||||| |
Sbjct 575349 ACCACCACGAAGACGAAGGACCAAATGTAAAGTTGATTCTTTTTGGATGTTGTAGTCGGA 575408
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| || ||||||||||| ||||| || || |||||||| | ||||||||||||| ||
Sbjct 575409 AAGAGTTCGGCCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGTTGGTCAGGTGG 575468
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|||||||| |||||||| ||||| || || || | ||||| || ||||| | || ||
Sbjct 575469 GATACCCTCTTTGTCTTGAATCTTAGCCTTCACATTGTCGATGGTATCCGACGACTCAAC 575528
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| | |||||| ||||| || || | |||||| ||||| ||||||||
Sbjct 575529 CTCTAAAGTGATTGTCTTTCCGGTGAGAGTCTTGACGAAGATCTGCAT 575576
Score = 170 bits (188), Expect = 4e-37
Identities = 171/222 (77%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || | || |||| ||| | || || || |||||||| ||||| |
Sbjct 575577 ACCACCACGAAGTCTGAGAACCAAATGGAGAGTAGACTCCTTCTGGATGTTATAGTCTGA 575636
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || || |||||||| ||||| || ||||| || ||||||||||||||||| ||
Sbjct 575637 GAGGGTACGACCATCCTCAAGTTGCTTTCCGGCGAAAATCAAACGTTGTTGGTCGGGTGG 575696
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||| |||||||| ||||| ||||| ||| |||||||||| || |||| ||| ||
Sbjct 575697 GATGCCCTCTTTGTCTTGAATCTTGGCTTTGACGTTATCGATAGTATCAGAAGATTCAAC 575756
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATAT 283093
||||| ||||| ||||| || || | |||||||||| |||
Sbjct 575757 CTCGAGGGTGATGGTCTTTCCGGTGAGGGTCTTAACGACTAT 575798
Score = 147 bits (162), Expect = 5e-30
Identities = 156/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| ||||| || || ||||| | ||| || || || ||||||||||| |
Sbjct 575861 ACCACCACGAAGGCGGAGGACGAGATGAAGTGTGGACTCCTTCTGAATGTTGTAGTCTGA 575920
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| ||||| ||||| || ||||| || || || || |||||||| ||||| || ||
Sbjct 575921 GAGGGTGCGACCATCTTCAAGTTGCTTGCCTGCGAAAATCAAACGCTGTTGATCGGGAGG 575980
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| |||||||||||||||||||| ||||| || | || |||||||| | |||||
Sbjct 575981 AATCCCCTCCTTGTCTTGGATCTTGGCTTTGACATTGTCAATAGTGTCGCTGGACTCGAC 576040
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCA 283077
|| || ||||| ||||| || ||||
Sbjct 576041 CTCAAGGGTGATGGTCTTTCCAGTCA 576066
>seq34
Length=376069
Score = 196 bits (216), Expect = 1e-44
Identities = 180/228 (79%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || || | |||| || | ||| || ||||||||||||||||| |
Sbjct 166304 ACCACCACGGAGACGTAACACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGA 166363
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| |||||||||||||| ||||| || ||||| |||||||| || |||||||| ||
Sbjct 166364 AAGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGG 166423
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| |||||||||||||||||||| || || || | ||||| |||||||||| || ||
Sbjct 166424 AATTCCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCCGAAGACTCAAC 166483
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| ||||| || || ||||| | ||||| ||||| ||||||||
Sbjct 166484 CTCGAGGGTGATAGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 166531
>seq5
Length=1928780
Score = 156 bits (172), Expect = 9e-33
Identities = 142/179 (79%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
|||||||||||||| || | ||| || || || ||||| ||||| || || || ||||||
Sbjct 1275125 TTTTGGATGTTGTAATCTGAAAGAGTACGTCCGTCCTCAAGTTGCTTTCCAGCGAAGATC 1275184
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031
||||||||||| || ||||| |||||||||||||||||||| || || || | |||
Sbjct 1275185 AAACGTTGTTGATCGGGGGGAATTCCCTCCTTGTCTTGGATCTTAGCCTTAACATTGTCG 1275244
Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
|||||||| || | ||||| || || ||||| ||||| ||||| | ||||| |||||
Sbjct 1275245 ATAGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAA 1275303
>seq9
Length=1212739
Score = 113 bits (124), Expect = 9e-20
Identities = 170/242 (70%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 230169 ACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATC 230228
|| |||| |||| || ||| | || ||| | ||| ||| |||||||| |||| |
Sbjct 165528 ACCGAAGCCGTTGAAATCGAACAAGAATTCTTGACCGAGGCTCTTCCTTGCTCTCTTTTA 165587
Query 230229 GGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTG 230288
|||||||| || ||||||| |||||| || || ||||| ||||||||| | | ||
Sbjct 165588 GGCATGAACTCTACTCTCATGAAGCAATACATTGAGTTCGTCGCTGATCGTCTGCTGGTT 165647
Query 230289 GCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATT 230348
|| | || |||| ||||| || || || ||||| |||| || |||||| |||
Sbjct 165648 GCTTTGGGTAACGACAAAGTCTACAAGTCTGCCAACCCATTCGACTTCATGGAGAACATC 165707
Query 230349 TCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCGGT 230408
|| | || || || ||||||||||| ||| | || | ||||| |||| | |||||
Sbjct 165708 TCCTTGGCTGGCAAGACCAACTTCTTCGAGAAGAGAGTTGGAGATTACCAAAAGGCCGGT 165767
Query 230409 GT 230410
||
Sbjct 165768 GT 165769
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046730844731442
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |