Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31] 623 sequences; 41,098,534 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq34 132 3e-26 seq18 107 1e-18 seq5 96.9 2e-15 >seq34 Length=376069 Score = 132 bits (146), Expect = 3e-26 Identities = 160/216 (74%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 44126 AACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCG 44185 ||||||| |||||| ||| |||||||||||||||||| |||| || ||| | || Sbjct 166320 AACACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCC 166379 Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 || || ||||| ||||| |||||||| ||||| || || | || | || ||||| || Sbjct 166380 TCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGTGGAATTCCCTCCTTGTCT 166439 Query 44246 GTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCG 44303 ||||| ||| || ||| | |||||||| | || || ||||| | || || | Sbjct 166440 TGGATCTTGGCCTTGACATTGT--CGATGGTGTCCGAAGACTCAACCTCGAGGGTGATAG 166497 Query 44304 TCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGA 44339 | || |||||||||||||| |||||||| ||||||| Sbjct 166498 TTTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGA 166533 >seq18 Length=877782 Score = 107 bits (118), Expect = 1e-18 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC--GAGTTGGCGCTCGTCG 44185 ||||| ||| | ||||| |||||||| ||||||||||| ||||| || |||| Sbjct 575139 CACCAAGTGCAAGGTGCTTTCCTTTTGAATGTTGTAATCCAAAAGAGTTCT-GC-CGTCC 575196 Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 |||| |||||| || || |||||||| ||||| ||||| | || | || ||||| ||| Sbjct 575197 TCCAACTGCTTTCCAGCGAAGATCAATCGCTGTTGATCAGGTGGAATGCCCTCCTTATCC 575256 Query 44246 GTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| ||| | | | || || || | ||||| ||||| | || || ||| Sbjct 575257 TGAATCTTAGCCTTGACATTATCAATAGTATCCGAAGATTCTACCTCTAATGTGATAGTC 575316 Query 44306 TTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || | |||||| || ||||||||||| Sbjct 575317 TTTCCAGTCAAGGTCTTAACAAAGATTTGCAT 575348 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGG--CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAA 44204 || |||||||||||||| |||| ||||| || | || || || ||||| || |||| Sbjct 575386 TCTTTTTGGATGTTGTAGTCGGAAAGAGTT--CGGCCATCCTCAAGTTGCTTACCAGCAA 575443 Query 44205 AGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG 44264 |||| | ||| || || || | || | ||| || || || ||||| ||||| Sbjct 575444 AGATAAGACGTTGTTGGTCAGGTGGGATACCCTCTTTGTCTTGAATCTTAGCCTTCACAT 575503 Query 44265 TTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 | | ||||| || | || || ||||| | || || |||||||| ||||| ||||| | Sbjct 575504 TGTCGATGGTATCCGACGACTCAACCTCTAAAGTGATTGTCTTTCCGGTGAGAGTCTTGA 575563 Query 44325 CGAAGATTTGCAT 44337 ||||||| ||||| Sbjct 575564 CGAAGATCTGCAT 575576 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/188 (71%), Gaps = 6/188 (3%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || ||||| ||| |||||| || |||||||| || | ||| ||| | || || Sbjct 575880 ACGAGATGAAGTGTGGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTGCGACCATCTTCA 575939 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| || || || ||||||||||| ||||| | ||| | || ||||| || Sbjct 575940 AGTTGCTTGCCTGCGAAAATCAAACGCTGTTGATCGGGAGGAATCCCCTCCTTGTCTTGG 575999 Query 44249 ATCTTCTGCTT---CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| |||| || ||| | || |||||| ||| || ||||| | || || ||| Sbjct 576000 ATCTT-GGCTTTGACATTGT--CAATAGTGTCGCTGGACTCGACCTCAAGGGTGATGGTC 576056 Query 44306 TTTCCCGT 44313 ||||| || Sbjct 576057 TTTCCAGT 576064 >seq5 Length=1928780 Score = 96.9 bits (106), Expect = 2e-15 Identities = 133/184 (72%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 ||||||||||||||||||| | || || |||| || || ||||| || || |||| Sbjct 1275123 CCTTTTGGATGTTGTAATCTGAAAGAGTACGTCCGTCCTCAAGTTGCTTTCCAGCGAAGA 1275182 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 ||||||| || ||||| | || | || ||||| || ||||| ||| || ||| Sbjct 1275183 TCAAACGTTGTTGATCGGGGGGAATTCCCTCCTTGTCTTGGATCTTAGCCTTAACATTGT 1275242 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | || ||||| | ||| || ||||| | || || ||||| ||||| |||||||| || Sbjct 1275243 --CGATAGTGTCAGAGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTAAGGGTCTTGAC 1275300 Query 44326 GAAG 44329 |||| Sbjct 1275301 GAAG 1275304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359987666660391