Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31] 623 sequences; 41,098,534 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq34 145 7e-30 seq18 116 3e-21 >seq34 Length=376069 Score = 145 bits (160), Expect = 7e-30 Identities = 173/233 (74%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 || || || || ||||||||||||| || || ||| |||||| || ||||| |||||| Sbjct 166302 CCACCACCACGGAGACGTAACACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCG 166361 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 || |||||||| | || ||||| ||||| |||||||| |||| ||||||||||| | Sbjct 166362 GAAAGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGT 166421 Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACT 41810 |||| | ||||||||| ||| || ||| || | || | ||||| |||| Sbjct 166422 GGAATTCCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCG--ATGGTGTCCGAAGACT 166479 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | ||||| | || || ||||| ||||| || ||||| ||||| ||||||||| Sbjct 166480 CAACCTCGAGGGTGATAGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 166532 >seq18 Length=877782 Score = 116 bits (128), Expect = 3e-21 Identities = 151/206 (73%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || ||||| || ||| ||||||||||||||| ||||| ||| Sbjct 575862 CCACCACGAAGGCGGAGGACGAGATGAAGTGTGGACTCCTTCTGAATGTTGTAGTCTGAG 575921 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || || |||||||| ||||| |||| |||||||| || | ||| Sbjct 575922 AGGGTGCGACCATCTTCAAGTTGCTTGCCTGCGAAAATCAAACGCTGTTGATCGGGAGGA 575981 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||| | || | || |||| || | | | ||||||||| ||||| || Sbjct 575982 ATCCCCTCCTTGT-CTTGGATCTTGGCTTTGACATTGTCAATAGTGTCGCTGGACTCGAC 576040 Query 41815 CTCCACCGTTATCGTTTTACCCGTCA 41840 ||| | || || || || || |||| Sbjct 576041 CTCAAGGGTGATGGTCTTTCCAGTCA 576066 Score = 93.3 bits (102), Expect = 4e-14 Identities = 142/200 (71%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| ||| || || ||||||||| ||||||||||| |||||||| || | || || Sbjct 575596 ACCAAATGGAGAGTAGACTCCTTCTGGATGTTATAGTCTGAGAGGGTACGACCATCCTCA 575655 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 || ||||| |||||||| |||| || |||||||| | || | || ||| |||| | || Sbjct 575656 AGTTGCTTTCCGGCGAAAATCAAACGTTGTTGGTCGGGTGGGATGCCCTCTTTGT-CTTG 575714 Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | | || |||| ||| | | ||| || || || ||||| | || || || || Sbjct 575715 AATCTTGGCTTTGACGTTATCGATAGTATCAGAAGATTCAACCTCGAGGGTGATGGTCTT 575774 Query 41833 ACCCGTCAGCGTCTTTACGA 41852 || || || ||||| |||| Sbjct 575775 TCCGGTGAGGGTCTTAACGA 575794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462300399807600