Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20glacialis_20[genbank_20GCA_5F002162575.1_202017-05-31]
623 sequences; 41,098,534 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq34 145 7e-30
seq18 116 3e-21
>seq34
Length=376069
Score = 145 bits (160), Expect = 7e-30
Identities = 173/233 (74%), Gaps = 4/233 (2%)
Strand=Plus/Plus
Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692
|| || || || ||||||||||||| || || ||| |||||| || ||||| ||||||
Sbjct 166302 CCACCACCACGGAGACGTAACACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAGTCG 166361
Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752
|| |||||||| | || ||||| ||||| |||||||| |||| ||||||||||| |
Sbjct 166362 GAAAGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAATCGCTGTTGGTCGGGT 166421
Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACT 41810
|||| | ||||||||| ||| || ||| || | || | ||||| ||||
Sbjct 166422 GGAATTCCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCG--ATGGTGTCCGAAGACT 166479
Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
| ||||| | || || ||||| ||||| || ||||| ||||| |||||||||
Sbjct 166480 CAACCTCGAGGGTGATAGTTTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 166532
>seq18
Length=877782
Score = 116 bits (128), Expect = 3e-21
Identities = 151/206 (73%), Gaps = 2/206 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | || ||||| || ||| ||||||||||||||| ||||| |||
Sbjct 575862 CCACCACGAAGGCGGAGGACGAGATGAAGTGTGGACTCCTTCTGAATGTTGTAGTCTGAG 575921
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || || || |||||||| ||||| |||| |||||||| || | |||
Sbjct 575922 AGGGTGCGACCATCTTCAAGTTGCTTGCCTGCGAAAATCAAACGCTGTTGATCGGGAGGA 575981
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | |||||||| | || | || |||| || | | | ||||||||| ||||| ||
Sbjct 575982 ATCCCCTCCTTGT-CTTGGATCTTGGCTTTGACATTGTCAATAGTGTCGCTGGACTCGAC 576040
Query 41815 CTCCACCGTTATCGTTTTACCCGTCA 41840
||| | || || || || || ||||
Sbjct 576041 CTCAAGGGTGATGGTCTTTCCAGTCA 576066
Score = 93.3 bits (102), Expect = 4e-14
Identities = 142/200 (71%), Gaps = 2/200 (1%)
Strand=Plus/Plus
Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713
|||| ||| || || ||||||||| ||||||||||| |||||||| || | || ||
Sbjct 575596 ACCAAATGGAGAGTAGACTCCTTCTGGATGTTATAGTCTGAGAGGGTACGACCATCCTCA 575655
Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773
|| ||||| |||||||| |||| || |||||||| | || | || ||| |||| | ||
Sbjct 575656 AGTTGCTTTCCGGCGAAAATCAAACGTTGTTGGTCGGGTGGGATGCCCTCTTTGT-CTTG 575714
Query 41774 ATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832
| | || |||| ||| | | ||| || || || ||||| | || || || ||
Sbjct 575715 AATCTTGGCTTTGACGTTATCGATAGTATCAGAAGATTCAACCTCGAGGGTGATGGTCTT 575774
Query 41833 ACCCGTCAGCGTCTTTACGA 41852
|| || || ||||| ||||
Sbjct 575775 TCCGGTGAGGGTCTTAACGA 575794
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462300399807600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |