Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12- 14] 257 sequences; 43,359,131 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq182 159 7e-34 >seq182 Length=792865 Score = 159 bits (176), Expect = 7e-34 Identities = 188/252 (75%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 230387 TCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCC 230446 |||| ||||| || ||||| | |||| | || ||| | || ||| |||| ||| | Sbjct 654961 TCATCACAGAGGCTGTTGAGATCGAACAAGAATTCTTGACCGAGGCTCTTCCTTGTGCAC 655020 Query 230447 TTATTGGCATGAACGCTGAACTT-ATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 || ||||||||||||| |||||| ||| || |||||||| ||||| ||||| || || Sbjct 655021 TTCTTGGCATGAACGC-GAACTTGATGAAGCAATACATCGAGTTCGTTGCCGATCGTCTT 655079 Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565 | || || |||||| ||||||| |||||||| ||| ||||| || | || |||||| Sbjct 655080 CTAGTCGCTCTTGGTAACGAGAAGGTGTACAAGTCTGCCAACCCATTCGACTTCATGGAG 655139 Query 230566 CTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGG 230625 ||| || || ||| ||||| ||||||||||| ||| | || ||||||| |||| | Sbjct 655140 AACATCTCCCTAGCAGGCAAGACAAACTTCTTCGAGAAGAGAGTTGGTGACTACCAGAAG 655199 Query 230626 CCTGGTGTGATG 230637 ||||||| ||| Sbjct 655200 GCTGGTGTTATG 655211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057820516783910