Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12- 14] 257 sequences; 43,359,131 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq247 82.4 7e-11 seq112 82.4 7e-11 >seq247 Length=916335 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| |||| || ||||| || || |||||||| ||| |||| | || Sbjct 302595 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACCATTACATTGGAAGTGGAATCGTCA 302536 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | ||| ||| ||| || || || ||| | || || ||| Sbjct 302535 GATACCATTGACAATGTCAAGTCAAAGATTCAAGACAAGGAGGGTATCCCACCGGACCAA 302476 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || | |||||||| || || || |||| ||| || |||| | | |||||||| Sbjct 302475 CAGCGATTGATCTTTGCTGGAAAGCAGTTGGAGGATGGCAGAACTCTTTCTGATTACAAC 302416 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTG 29171 ||||||||||| ||| | ||| ||||| Sbjct 302415 ATTCAGAAGGAGAGCACTTTGCACTTGGTG 302386 >seq112 Length=1448063 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| |||| || ||||| || || |||||||| ||| |||| | || Sbjct 1211594 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACCATTACATTGGAAGTGGAATCGTCA 1211653 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | ||| ||| ||| || || || ||| | || || ||| Sbjct 1211654 GATACCATTGACAATGTCAAGTCAAAGATTCAAGACAAGGAGGGTATCCCACCGGACCAA 1211713 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || | |||||||| || || || |||| ||| || |||| | | |||||||| Sbjct 1211714 CAGCGATTGATCTTTGCTGGAAAGCAGTTGGAGGATGGCAGAACTCTTTCTGATTACAAC 1211773 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTG 29171 ||||||||||| ||| | ||| ||||| Sbjct 1211774 ATTCAGAAGGAGAGCACTTTGCACTTGGTG 1211803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428334658371335