Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12-
14] 257 sequences; 43,359,131 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq182 152 5e-32
seq89 132 5e-26
seq247 107 2e-18
seq112 107 2e-18
>seq182
Length=792865
Score = 152 bits (168), Expect = 5e-32
Identities = 205/285 (72%), Gaps = 3/285 (1%)
Strand=Plus/Plus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||||||||||||||| || |||||||| | || ||| | ||| ||
Sbjct 654300 ATCTGGCAAATGTACAAAAAGGCCGAGGCATCTTTCTGGACAGCAGAAGAGATCGACTTG 654359
Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAAG 116752
|| |||||| ||| ||| | | | || || | |||||| ||||||||
Sbjct 654360 TCAAAGGACCTTCACGATTGGAATAACAAACTCAATGATGATGAGCGCTATTTCATCTCT 654419
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812
||||| || || || ||||| || |||||| || ||||||||||| || ||||||||
Sbjct 654420 CACGTCCTCGCATTCTTCGCAGCATCCGACGGAATAGTCAACGAGAACCTTGTCGAGCGC 654479
Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872
||| | || || || | ||||||| || ||||||||||| || || || |||
Sbjct 654480 TTCAGTGGTGAAGTTCAAATCCCCGAGGCTCGTTGCTTCTACGGTTTCCAAATTATGATG 654539
Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917
|||||| | ||||| |||| || || ||||||||| || |||
Sbjct 654540 GAGAACATCCACTCCGAAACATACTCTCTCCTCATCGATACATAC 654584
Score = 116 bits (128), Expect = 4e-21
Identities = 267/397 (67%), Gaps = 4/397 (1%)
Strand=Plus/Plus
Query 117036 AGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCA 117095
|||| ||||| || || || || || |||||| ||||||| || ||||| | |
Sbjct 654754 AGCGTCTGGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTCAGTGGATCATTCGCTTCTA 654813
Query 117096 TATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCT 117155
| || ||||||||||| || ||| | ||| | || || |||||| ||| ||||||||||
Sbjct 654814 TCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACTTTCTCCAATGAGCTCATCT 654873
Query 117156 CCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGC 117215
|| | || || ||||| ||| |||||| || || | || ||| || ||| ||| |
Sbjct 654874 CCCGTGATGAAGGTCTCCATACCGACTTCGCGTGCCTCCTCTTCTCCCACTTGAAGCACC 654933
Query 117216 GACCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCT 117275
| || ||| | | ||| || || |||| || || || | ||||| || |
Sbjct 654934 GTCCAAGCAAGCAGGCTGTCCAAGATGTCATCACAGAGGCTGTTGAGATCGAACAAGAAT 654993
Query 117276 TCCTCACCGAAGCGCTGCC-GGTGCGTCTGCTGGGACTCAATTGCGAA-ACGATGTCGCA 117333
|| | ||||| || || || |||| || || || | || ||||| |||| |||
Sbjct 654994 TCTTGACCGAGGCTCTTCCTTGTGC-ACTTCTTGGCATGAA-CGCGAACTTGATGAAGCA 655051
Query 117334 ATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAA 117393
||||||||||||||| ||||| | || || ||| || | || ||| |||||
Sbjct 655052 ATACATCGAGTTCGTTGCCGATCGTCTTCTAGTCGCTCTTGGTAACGAGAAGGTGTACAA 655111
Query 117394 CACGCCCAACCCGCTGGACTTTATGAACCTCATCTCC 117430
| ||||||| | ||||| ||| | |||||||
Sbjct 655112 GTCTGCCAACCCATTCGACTTCATGGAGAACATCTCC 655148
>seq89
Length=741344
Score = 132 bits (146), Expect = 5e-26
Identities = 151/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| ||||| |||||||| |||||||||||| |||| || ||| || |
Sbjct 321744 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 321685
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | | ||||| || || | ||||| ||||| ||||| | || |||
Sbjct 321684 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCAG 321625
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| || |||| ||| ||||| || || || || | |||||||| ||||||||||
Sbjct 321624 CAACGTCTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAAC 321565
Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892
||||| ||||| |||| || ||
Sbjct 321564 ATCCAAAAGGAATCCACTCTTCA 321542
>seq247
Length=916335
Score = 107 bits (118), Expect = 2e-18
Identities = 138/188 (73%), Gaps = 2/188 (1%)
Strand=Plus/Minus
Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770
|||| ||||| ||||||||| |||| ||||| ||| ||| | | | | |||| | |||
Sbjct 303309 TCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACCATCGACAACG-TAAAG 303251
Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830
|| |||| || || ||||| || ||| ||||||| || || | |||| ||| |||
Sbjct 303250 AGCAAGATTCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGC 303191
Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890
||||| || || || | || ||| | | |||||||||||| || |||||| | || ||
Sbjct 303190 AAACAACTTGAAGATGGCCGTACCTTGAGCGACTACAACATTCAAAAGGAGTCTACTCTC 303131
Query 40891 CATCTAGT 40898
||||| ||
Sbjct 303130 CATCTCGT 303123
Score = 102 bits (112), Expect = 8e-17
Identities = 146/206 (71%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759
|||| || || ||||| ||||| |||||||| | || ||||| | |||||| | |
Sbjct 303041 TCGTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCG 302982
Query 40760 AAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCA 40819
| | ||||| || || | ||||| ||||| || || |||| || ||||| | |
Sbjct 302981 ACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAACAACGTTTGA 302922
Query 40820 TCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879
||| ||| || ||||| || || || | |||||||| | ||||||||||||||| || |
Sbjct 302921 TCTTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAG 302862
Query 40880 AGGCCACGCTGCATCTAGTGTTGCGC 40905
| |||| || || | ||| | |||
Sbjct 302861 AATCCACCCTTCACTTGGTGCTCCGC 302836
Score = 93.3 bits (102), Expect = 4e-14
Identities = 145/205 (71%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || || || || || || ||||| | || || || | |
Sbjct 302823 ATGCAAATCTTCGTCAAGACACTTACCGGAAAGACAATCACATTGGAGGTTGAGTCGTCA 302764
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | | |||| | || ||| || | || || ||||| ||||| |||||||
Sbjct 302763 GATACCATCGACAACG-TGAAATCAAAGATCCAAGATAAGGAGGGTATCCCACCGGACCA 302705
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|||||| || |||| || || || || || || || | ||||| || ||||||||
Sbjct 302704 GCAACGTCTTATCTTTGCTGGTAAGCAACTTGAGGATGGCCGCACTCTATCAGACTACAA 302645
Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893
||||||||| ||| |||| ||||||
Sbjct 302644 CATCCAGAAAGAGTCCACACTGCAT 302620
>seq112
Length=1448063
Score = 107 bits (118), Expect = 2e-18
Identities = 138/188 (73%), Gaps = 2/188 (1%)
Strand=Plus/Plus
Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770
|||| ||||| ||||||||| |||| ||||| ||| ||| | | | | |||| | |||
Sbjct 1210880 TCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACCATCGACAACG-TAAAG 1210938
Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830
|| |||| || || ||||| || ||| ||||||| || || | |||| ||| |||
Sbjct 1210939 AGCAAGATTCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGC 1210998
Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890
||||| || || || | || ||| | | |||||||||||| || |||||| | || ||
Sbjct 1210999 AAACAACTTGAAGATGGCCGTACCTTGAGCGACTACAACATTCAAAAGGAGTCTACTCTC 1211058
Query 40891 CATCTAGT 40898
||||| ||
Sbjct 1211059 CATCTCGT 1211066
Score = 102 bits (112), Expect = 8e-17
Identities = 146/206 (71%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759
|||| || || ||||| ||||| |||||||| | || ||||| | |||||| | |
Sbjct 1211148 TCGTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCG 1211207
Query 40760 AAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCA 40819
| | ||||| || || | ||||| ||||| || || |||| || ||||| | |
Sbjct 1211208 ACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAACAACGTTTGA 1211267
Query 40820 TCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGG 40879
||| ||| || ||||| || || || | |||||||| | ||||||||||||||| || |
Sbjct 1211268 TCTTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAG 1211327
Query 40880 AGGCCACGCTGCATCTAGTGTTGCGC 40905
| |||| || || | ||| | |||
Sbjct 1211328 AATCCACCCTTCACTTGGTGCTCCGC 1211353
Score = 93.3 bits (102), Expect = 4e-14
Identities = 145/205 (71%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || || || || || || ||||| | || || || | |
Sbjct 1211366 ATGCAAATCTTCGTCAAGACACTTACCGGAAAGACAATCACATTGGAGGTTGAGTCGTCA 1211425
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | | |||| | || ||| || | || || ||||| ||||| |||||||
Sbjct 1211426 GATACCATCGACAACG-TGAAATCAAAGATCCAAGATAAGGAGGGTATCCCACCGGACCA 1211484
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|||||| || |||| || || || || || || || | ||||| || ||||||||
Sbjct 1211485 GCAACGTCTTATCTTTGCTGGTAAGCAACTTGAGGATGGCCGCACTCTATCAGACTACAA 1211544
Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893
||||||||| ||| |||| ||||||
Sbjct 1211545 CATCCAGAAAGAGTCCACACTGCAT 1211569
Score = 84.2 bits (92), Expect = 2e-11
Identities = 132/188 (70%), Gaps = 2/188 (1%)
Strand=Plus/Plus
Query 40694 AAATA--TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGA 40751
||||| ||||| || || || ||||| || ||||||||| | || ||||| || | ||
Sbjct 15517 AAATAGCTTCGTCAAGACCCTTACGGGAAAGACCATCACCCTTGAGGTCGAGTCCTCTGA 15576
Query 40752 CAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCA 40811
| | | | ||||| || || | ||||| ||||| || ||| ||||||| ||
Sbjct 15577 TACTATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAACA 15636
Query 40812 ACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACAT 40871
||| | |||| ||| || || || || || |||| || ||||| |||||||||||
Sbjct 15637 ACGTTTGATCTTCGCCGGAAAGCAACTCGAGGACGGACGAACCCTTTCAGACTACAACAT 15696
Query 40872 CCAGAAGG 40879
|| ||||
Sbjct 15697 TCAAAAGG 15704
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515217544858320
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