Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12- 14] 257 sequences; 43,359,131 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq247 113 3e-20 seq112 113 3e-20 seq89 98.7 6e-16 >seq247 Length=916335 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | ||||||| ||| ||||| || || ||||| |||||||| || || Sbjct 302369 CCGCCACGAAGACGAAGCACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAA 302428 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || | | | || ||||||||||| || || || || | ||||| ||||| || Sbjct 302429 AGAGTTCTGCCATCCTCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGG 302488 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| |||||| ||| | || | | || | ||| | |||||| || Sbjct 302489 ATACCCTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCCACT 302548 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || ||||| || || || | ||| || || ||||||||||| Sbjct 302549 TCCAATGTAATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 302595 Score = 82.4 bits (90), Expect = 5e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | || || || || | |||| || || || |||||||||||| | Sbjct 303105 CCGCCACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTC 303164 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | |||| | || || | || ||||||||||| || | ||||| ||||| ||| Sbjct 303165 AAGGTACGGCCATCTTCAAGTTGTTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGA 303224 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||| || ||||| ||||| | | | || | |||| | || ||||| Sbjct 303225 ATTCCCTCCTTATCCTGAATCTTGCTCTTTACGTTGTCGATGGTATCGCTGGACTCGACC 303284 Query 34343 TCCACCGTGATGGTTTTGCCGGTGA 34367 || | |||||||| |||||||||| Sbjct 303285 TCGAGGGTGATGGTCTTGCCGGTGA 303309 >seq112 Length=1448063 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | ||||||| ||| ||||| || || ||||| |||||||| || || Sbjct 1211820 CCGCCACGAAGACGAAGCACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAA 1211761 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || | | | || ||||||||||| || || || || | ||||| ||||| || Sbjct 1211760 AGAGTTCTGCCATCCTCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGG 1211701 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| |||||| ||| | || | | || | ||| | |||||| || Sbjct 1211700 ATACCCTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCCACT 1211641 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || ||||| || || || | ||| || || ||||||||||| Sbjct 1211640 TCCAATGTAATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 1211594 Score = 82.4 bits (90), Expect = 5e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | || || || || | |||| || || || |||||||||||| | Sbjct 1211084 CCGCCACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTC 1211025 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | |||| | || || | || ||||||||||| || | ||||| ||||| ||| Sbjct 1211024 AAGGTACGGCCATCTTCAAGTTGTTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGA 1210965 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||| || ||||| ||||| | | | || | |||| | || ||||| Sbjct 1210964 ATTCCCTCCTTATCCTGAATCTTGCTCTTTACGTTGTCGATGGTATCGCTGGACTCGACC 1210905 Query 34343 TCCACCGTGATGGTTTTGCCGGTGA 34367 || | |||||||| |||||||||| Sbjct 1210904 TCGAGGGTGATGGTCTTGCCGGTGA 1210880 >seq89 Length=741344 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| | ||| ||| || || |||||||||||||| || || | || Sbjct 321533 AGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCT 321592 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||||| ||||| || || || ||||| || || | | ||||||||| Sbjct 321593 TCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCC 321652 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | | || | ||| | ||||| || || | ||||||||| Sbjct 321653 TGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTT 321712 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || ||||| ||||| || ||||||||||| Sbjct 321713 TTACCCGTGAGGGTTTTGACGAAGATCTGCAT 321744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323070988077920