Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12-
14] 257 sequences; 43,359,131 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq247 107 2e-18
seq112 107 2e-18
>seq247
Length=916335
Score = 107 bits (118), Expect = 2e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||||| ||||||||||||||||||||||| || || | | || |||
Sbjct 302387 ACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCATCCTCC 302446
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
| || ||||| || || ||||| ||||||||||| || || | |||||||||||| |
Sbjct 302447 AACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTGA 302506
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| ||| ||| || | | | | || ||||| |||| ||||| |||||
Sbjct 302507 ATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTCTTT 302566
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| |||| |||||| || ||||| |||||
Sbjct 302567 CCAGTCAAAGTCTTGACGAAGATCTGCAT 302595
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || ||| || || || |||||||||||| |||| |||| | || ||
Sbjct 302843 ACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCG 302902
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|||||||| || ||||| ||||| || ||||| || ||||| | |||||||||||||
Sbjct 302903 AGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATACCCTCCTTGTCCTGG 302962
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | |||| ||| ||||| | || || ||||||
Sbjct 302963 ATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCGACCTCAAGAGTGATGGTCTTG 303022
Query 45308 CCCGTCAGAGTCTTCAC 45324
|| || |||||||| ||
Sbjct 303023 CCAGTGAGAGTCTTGAC 303039
Score = 82.4 bits (90), Expect = 6e-11
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204
|||||| ||||||||||||||| ||| || | || || |||||||| || |||||
Sbjct 303140 CTCCTTTTGAATGTTGTAGTCGCTCAAGGTACGGCCATCTTCAAGTTGTTTGCCTGCGAA 303199
Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
||||| ||||||||||| || || | |||||||| ||| ||| ||
Sbjct 303200 GATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATCCTGAATCTT 303247
>seq112
Length=1448063
Score = 107 bits (118), Expect = 2e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||||| ||||||||||||||||||||||| || || | | || |||
Sbjct 1211802 ACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCATCCTCC 1211743
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
| || ||||| || || ||||| ||||||||||| || || | |||||||||||| |
Sbjct 1211742 AACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTGA 1211683
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| ||| ||| || | | | | || ||||| |||| ||||| |||||
Sbjct 1211682 ATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTCTTT 1211623
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| |||| |||||| || ||||| |||||
Sbjct 1211622 CCAGTCAAAGTCTTGACGAAGATCTGCAT 1211594
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || ||| || || || |||||||||||| |||| |||| | || ||
Sbjct 1211346 ACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCG 1211287
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|||||||| || ||||| ||||| || ||||| || ||||| | |||||||||||||
Sbjct 1211286 AGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATACCCTCCTTGTCCTGG 1211227
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | |||| ||| ||||| | || || ||||||
Sbjct 1211226 ATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCGACCTCAAGAGTGATGGTCTTG 1211167
Query 45308 CCCGTCAGAGTCTTCAC 45324
|| || |||||||| ||
Sbjct 1211166 CCAGTGAGAGTCTTGAC 1211150
Score = 82.4 bits (90), Expect = 6e-11
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204
|||||| ||||||||||||||| ||| || | || || |||||||| || |||||
Sbjct 1211049 CTCCTTTTGAATGTTGTAGTCGCTCAAGGTACGGCCATCTTCAAGTTGTTTGCCTGCGAA 1210990
Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
||||| ||||||||||| || || | |||||||| ||| ||| ||
Sbjct 1210989 GATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATCCTGAATCTT 1210942
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395073962550397
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |