Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12-
14] 257 sequences; 43,359,131 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq236 87.8 4e-12
>seq236
Length=650478
Score = 87.8 bits (96), Expect = 4e-12
Identities = 181/267 (68%), Gaps = 2/267 (1%)
Strand=Plus/Plus
Query 94774 TGAAAGTGGATGCCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTA 94833
|||| || || || | ||||||||| | || ||||| || || ||| || |||
Sbjct 519680 TGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACATGTCTTGAGGGTA 519739
Query 94834 TCATAAATACCCTCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTG- 94892
||||||||||| ||||| ||||| || | | | | |||||||| || ||||| ||
Sbjct 519740 TCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGGAAGCATGATGAAAGCTGT 519799
Query 94893 GGGTGTGACTGTTCCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGA 94952
| |||| ||| ||| || ||||| ||||| || || || || || | | ||
Sbjct 519800 GCTTGTG-GTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAAGTATTTGTTGGA 519858
Query 94953 CATGAGATCATATGTTTCAATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCAC 95012
||| || | || || |||||| | | ||| || |||||||| || || || ||
Sbjct 519859 CATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCGTGAATACCAACGGCAAC 519918
Query 95013 ACGCATAATCATGTCCTGAGGGCGCTC 95039
|||||| ||||| | ||| || || ||
Sbjct 519919 ACGCATGATCATTTGCTGTGGACGTTC 519945
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989580741485435
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |