Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12-
14] 257 sequences; 43,359,131 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq236 269 3e-67
seq182 104 3e-17
>seq236
Length=650478
Score = 269 bits (298), Expect = 3e-67
Identities = 1141/1775 (64%), Gaps = 33/1775 (2%)
Strand=Plus/Plus
Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898
||||| ||||| || |||||||||| | ||||| || ||||||||||| || || |||
Sbjct 518183 GTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 518242
Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958
|| | |||| ||| |||||||| || | ||| | || ||| ||
Sbjct 518243 CCCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATG 518302
Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018
|| || ||||| ||||| || || | ||||| || | || || ||||||| |
Sbjct 518303 TGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCATTTGAACA 518362
Query 65019 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 65078
|| || ||| | ||| ||||| | || || |||| | ||| || || |||||| |
Sbjct 518363 ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAATG 518422
Query 65079 TTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 65135
|| | | || ||||| || |||||||| || || || | ||||| || | || |
Sbjct 518423 TTGGGAATGTTTTGAATAGAACCACCATCAGCGATGATACGGTTCTTCATGTTGTCTGAC 518482
Query 65136 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 65195
|||||| | ||| | | | | || || || ||||| ||||| |||||||||
Sbjct 518483 CATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCCA 518542
Query 65196 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCC 65255
| ||| || | |||| ||| || ||| || || ||||| | |||| || ||
Sbjct 518543 GCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAACCG 518602
Query 65256 AAAATTTGAGCAGTTGATG-CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 65314
| |||||||| || || || | || |||||||| || || | ||||| || | | |||
Sbjct 518603 AGAATTTGAG-AGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACACC 518661
Query 65315 GTATGTTCTGATTTTATCTTTTAGAGGT-TCCCAATTCCAAAGATCCGACGGTACAACNN 65373
|| | | |||| || | || || | ||||| | |||||| || | ||| |||
Sbjct 518662 GTGTTGTTTGATGG-ATTTCTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTAACTC 518720
Query 65374 NNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATG 65433
||| || || || | | || ||| | || || || || |
Sbjct 518721 CCCACATATCGTATTGAAGTTCGCCCTTCGAGACAGGTGAGCCTTCGTAGGTCTCATAGG 518780
Query 65434 GTCCTTCCTTCTCAGCTAGTTCACAACTCGCC-TCT-AATGCACCGTAATAAATGGTTTC 65491
|| || || ||| | || |||| | | | || ||| ||| ||||| |||||
Sbjct 518781 TACCCAACTCCTTAGCAA--TCTCAACGGACGATGTCAAAGCAGCGTGGTAAATAGTTTC 518838
Query 65492 GAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTAT-CAAATGGATAATTTAAGAGA 65549
|||||| | | || || | |||| ||||| ||| || ||||||| |||| |||||
Sbjct 518839 GAAGATTTGAATGTTGAGGTGCTTG-GCTTC-AGGTGATTCAAATGG-TAATCGAAGAGC 518895
Query 65550 -ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 65608
| ||| || || || | ||||||||||| | | ||||||||| ||| | ||| |
Sbjct 518896 CAAAAAAGCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATT-GC 518954
Query 65609 GATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGA 65667
|||| | | ||||| | || || || || || || || || || || | |||||||
Sbjct 518955 TCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTGA 519014
Query 65668 CAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCTCATCTAT-TACA 65723
||| |||| || || | || || | ||||| | || ||||| || | ||
Sbjct 519015 CAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTCATTCATGTCCA 519074
Query 65724 AACATGTTC--AATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCAT 65781
| ||||| | |||| || |||| ||||| || || |||| | | | |
Sbjct 519075 CAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAGT 519134
Query 65782 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTAC 65841
||| | || || ||||| | ||| | ||||| || | || | ||| || |
Sbjct 519135 ATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGC 519194
Query 65842 TCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATT 65901
|||| ||||| || |||||||| ||||| ||||||||| | || || ||| | |||| |
Sbjct 519195 TCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTGAGCCT 519254
Query 65902 CTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTT 65961
| | ||| | | ||| | | | || || || | || | |||| || ||
Sbjct 519255 CGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTC--TTGCGACCTCTACCTTCCTT 519312
Query 65962 CGTATAG-TGT-ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACA 66019
| ||| | | ||| | ||| |||||||| || | |||| |||| ||||||||
Sbjct 519313 CTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAACCCAGGACA 519372
Query 66020 TTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATC 66079
||||| || ||||| | | ||| || ||| | | || || ||||| ||||||||
Sbjct 519373 TTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAAGAGATC 519432
Query 66080 AGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCT 66138
|||||||| | || ||| || | ||| | || | ||| || || || ||||
Sbjct 519433 CGGAATCCACA-AGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCGTGGTTCT 519491
Query 66139 TTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAA 66198
|| || || |||||| | | || ||| ||||| || || | || | || |
Sbjct 519492 TTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCAAATG 519551
Query 66199 CTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCA 66258
| ||||| || |||||||| || || || | ||||||||| |||||||| |||||| |
Sbjct 519552 CACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAACTCGTA 519611
Query 66259 ACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCAC 66318
||| || | || || ||||| |||| ||||| |||| ||| || ||| | ||||
Sbjct 519612 GCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTGGCAC 519671
Query 66319 GAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTT 66378
| || | ||| ||||| || || || || |||||||||| | || ||| |
Sbjct 519672 GGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACATGTCT 519731
Query 66379 TTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAG 66438
| | |||||||| || || || |||||||| ||| |||| | || || || || |
Sbjct 519732 TGAGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGGAAGCATGATG 519791
Query 66439 ACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATT 66498
| | || | || || || || | ||||| || ||||| || || |||
Sbjct 519792 AAAGCTGTGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAAGTATT 519851
Query 66499 TTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCT 66557
| | || | || ||||| |||||||| || || ||||| || | ||||| ||
Sbjct 519852 TGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCG-TGAATACCA 519910
Query 66558 ACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 66592
|| || |||||||| | ||| ||||| || | |||
Sbjct 519911 ACGGCAACACGCATGATCATTTGCTGTGGACGTTC 519945
>seq182
Length=792865
Score = 104 bits (114), Expect = 3e-17
Identities = 227/336 (68%), Gaps = 7/336 (2%)
Strand=Plus/Minus
Query 36378 TTGTCTCTATAGCATTAAAGAGATA-GtttttttCATTACTATCTTTAACATATGTATCA 36436
||||||| || ||||| |||||||| ||| || | | || |||| ||||||||
Sbjct 654633 TTGTCTCAATTGCATTGAAGAGATATGTTCGTTGGGCTTGT-TCCTTAATGTATGTATCG 654575
Query 36437 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAA 36496
|| | ||| || |||| || || ||||| || || ||||| || ||||||||
Sbjct 654574 ATGAGGAGAGAGTATGTTTCGGAGTGGATGTTCTCCATCATAATTTGGAAACCGTAGAAG 654515
Query 36497 CATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACT 36556
|| | |||||||| || || ||||| || || || || | | || || || |||
Sbjct 654514 CAACGAGCCTCGGGGATTTGAACTTCACCACTGAAGCGCTCGACAAGGTTCTCGTTGACT 654455
Query 36557 ATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT----T 36612
|||||||| ||||| || || || | || || || ||||| || |
Sbjct 654454 ATTCCGTCGGATGCTGCGAAGAATGCGAGGACGTGAGAGATGAAATAGCGCTCATCATCA 654395
Query 36613 TGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCA 36672
| | ||| | ||||||||||| | | || || || | || | ||||| |||||||
Sbjct 654394 TTGAGTTTG-TTATTCCAATCGTGAAGGTCCTTTGACAAGTCGATCTCTTCTGCTGTCCA 654336
Query 36673 AAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 36708
|| |||||||| |||||||| ||||| | ||||||
Sbjct 654335 GAAAGATGCCTCGGCCTTTTTGTACATTTGCCAGAT 654300
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658170685619880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |