Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12-
14] 257 sequences; 43,359,131 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq247 105 7e-18
seq112 105 7e-18
seq89 89.7 5e-13
>seq247
Length=916335
Score = 105 bits (116), Expect = 7e-18
Identities = 93/116 (80%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035
|| || |||| || ||||||||||| |||||||| ||||||| |||| ||||||
Sbjct 302843 ACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCG 302902
Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091
|||||||||||||| |||||| |||||| ||||| ||||| || || || |||||
Sbjct 302903 AGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATACCCTCCTTGTC 302958
>seq112
Length=1448063
Score = 105 bits (116), Expect = 7e-18
Identities = 93/116 (80%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035
|| || |||| || ||||||||||| |||||||| ||||||| |||| ||||||
Sbjct 1211346 ACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCG 1211287
Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091
|||||||||||||| |||||| |||||| ||||| ||||| || || || |||||
Sbjct 1211286 AGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATACCCTCCTTGTC 1211231
>seq89
Length=741344
Score = 89.7 bits (98), Expect = 5e-13
Identities = 103/136 (76%), Gaps = 2/136 (1%)
Strand=Plus/Plus
Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016
||| || |||| ||| | || || |||| || ||||| ||||| |||||||| |||
Sbjct 321517 GCCACCACGTAGACGAAGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGA 321576
Query 143017 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075
| |||| || | ||||||||||| || || || ||||||||||||||||||| || |
Sbjct 321577 AAGGGTGCGTCCA-TCTTCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTG 321635
Query 143076 GTATGCCTTCTTTGTC 143091
| || || || |||||
Sbjct 321636 GGATTCCCTCCTTGTC 321651
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 507012771216240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |