Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12- 14] 257 sequences; 43,359,131 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq247 87.8 1e-12 seq112 87.8 1e-12 >seq247 Length=916335 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTA-ATTGACGCTCATCGTC 43971 |||||||| || ||| |||||| || || || || || || | || || |||| || Sbjct 302615 ACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGC-CATCCTC 302673 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 | ||| || || ||||| || | |||||||||||| | || | ||| || |||||| Sbjct 302674 AAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCTTG 302733 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 || ||| ||| || | | | ||||||| || ||| || || | || ||||| || Sbjct 302734 GATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAATGTGATTGTCTT 302793 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| | ||||| || || |||||||| Sbjct 302794 TCCGGTAAGTGTCTTGACGAAGATTTGCAT 302823 >seq112 Length=1448063 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTA-ATTGACGCTCATCGTC 43971 |||||||| || ||| |||||| || || || || || || | || || |||| || Sbjct 1211574 ACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGC-CATCCTC 1211516 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 | ||| || || ||||| || | |||||||||||| | || | ||| || |||||| Sbjct 1211515 AAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCTTG 1211456 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 || ||| ||| || | | | ||||||| || ||| || || | || ||||| || Sbjct 1211455 GATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAATGTGATTGTCTT 1211396 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| | ||||| || || |||||||| Sbjct 1211395 TCCGGTAAGTGTCTTGACGAAGATTTGCAT 1211366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354776488770036