Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12-
14] 257 sequences; 43,359,131 total letters
Query= NC_005068.1
Length=110907
Score E
Sequences producing significant alignments: (Bits) Value
seq247 87.8 1e-12
seq112 87.8 1e-12
>seq247
Length=916335
Score = 87.8 bits (96), Expect = 1e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTA-ATTGACGCTCATCGTC 43971
|||||||| || ||| |||||| || || || || || || | || || |||| ||
Sbjct 302615 ACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGC-CATCCTC 302673
Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031
| ||| || || ||||| || | |||||||||||| | || | ||| || ||||||
Sbjct 302674 AAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCTTG 302733
Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091
|| ||| ||| || | | | ||||||| || ||| || || | || ||||| ||
Sbjct 302734 GATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAATGTGATTGTCTT 302793
Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
||||| | ||||| || || ||||||||
Sbjct 302794 TCCGGTAAGTGTCTTGACGAAGATTTGCAT 302823
>seq112
Length=1448063
Score = 87.8 bits (96), Expect = 1e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTA-ATTGACGCTCATCGTC 43971
|||||||| || ||| |||||| || || || || || || | || || |||| ||
Sbjct 1211574 ACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGC-CATCCTC 1211516
Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031
| ||| || || ||||| || | |||||||||||| | || | ||| || ||||||
Sbjct 1211515 AAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCTTG 1211456
Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091
|| ||| ||| || | | | ||||||| || ||| || || | || ||||| ||
Sbjct 1211455 GATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAATGTGATTGTCTT 1211396
Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
||||| | ||||| || || ||||||||
Sbjct 1211395 TCCGGTAAGTGTCTTGACGAAGATTTGCAT 1211366
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 354776488770036
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |