Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12-
14] 257 sequences; 43,359,131 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq247 120 7e-22
seq112 120 7e-22
>seq247
Length=916335
Score = 120 bits (132), Expect = 7e-22
Identities = 141/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428
|| |||||||| || || ||||| |||||||| || || || | || |||||||||||
Sbjct 302405 TCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCATCCTCCAACTGCTTTCCAGCAAAG 302464
Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488
|| | | |||||| || || || || || || || || |||||||||| || |||||
Sbjct 302465 ATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTGAATCTTTGACTTGACATTG 302524
Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548
|| | |||||| | ||| || || | |||||| ||||| ||||| | || || ||
Sbjct 302525 TCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTCTTTCCAGTCAAAGTCTTGACG 302584
Query 104549 AATATCTGCAT 104559
|| ||||||||
Sbjct 302585 AAGATCTGCAT 302595
Score = 104 bits (114), Expect = 5e-17
Identities = 138/189 (73%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| || ||||| | ||||| || || ||||| || ||||| | || | || |||
Sbjct 303120 AGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTCAAGGTACGGCCATCT 303179
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| |||||||| || || || || | | |||||| || || || ||||| || ||||||
Sbjct 303180 TCAAGTTGTTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATCC 303239
Query 104468 TGAATCTTTGCT-TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
|||||| ||||| ||||| || || | ||||||||| | || ||||| || || || ||
Sbjct 303240 TGAATC-TTGCTCTTTACGTTGTCGATGGTATCGCTGGACTCGACCTCGAGGGTGATGGT 303298
Query 104527 CTTACCAGT 104535
||| || ||
Sbjct 303299 CTTGCCGGT 303307
>seq112
Length=1448063
Score = 120 bits (132), Expect = 7e-22
Identities = 141/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428
|| |||||||| || || ||||| |||||||| || || || | || |||||||||||
Sbjct 1211784 TCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCATCCTCCAACTGCTTTCCAGCAAAG 1211725
Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488
|| | | |||||| || || || || || || || || |||||||||| || |||||
Sbjct 1211724 ATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTGAATCTTTGACTTGACATTG 1211665
Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548
|| | |||||| | ||| || || | |||||| ||||| ||||| | || || ||
Sbjct 1211664 TCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTCTTTCCAGTCAAAGTCTTGACG 1211605
Query 104549 AATATCTGCAT 104559
|| ||||||||
Sbjct 1211604 AAGATCTGCAT 1211594
Score = 104 bits (114), Expect = 5e-17
Identities = 138/189 (73%), Gaps = 2/189 (1%)
Strand=Plus/Minus
Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407
|| || ||||| | ||||| || || ||||| || ||||| | || | || |||
Sbjct 1211069 AGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTCAAGGTACGGCCATCT 1211010
Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467
|| |||||||| || || || || | | |||||| || || || ||||| || ||||||
Sbjct 1211009 TCAAGTTGTTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATCC 1210950
Query 104468 TGAATCTTTGCT-TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
|||||| ||||| ||||| || || | ||||||||| | || ||||| || || || ||
Sbjct 1210949 TGAATC-TTGCTCTTTACGTTGTCGATGGTATCGCTGGACTCGACCTCGAGGGTGATGGT 1210891
Query 104527 CTTACCAGT 104535
||| || ||
Sbjct 1210890 CTTGCCGGT 1210882
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151394608660956
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |