Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12- 14] 257 sequences; 43,359,131 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq89 84.2 2e-11 seq247 82.4 6e-11 seq112 82.4 6e-11 >seq89 Length=741344 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTC 48576 || || ||||| ||| |||||||| |||||||| || | || || || | || || Sbjct 321536 ACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGA-AAGGGTGCGTCCATCTTC 321594 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 || ||||| ||| || | || | ||| |||||||| || | | ||||||||| Sbjct 321595 GAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCCTG 321654 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || || ||||| | | |||||||| | || || ||||| || |||||||| Sbjct 321655 GATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTTTT 321714 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| ||||| ||||| || || |||||||| Sbjct 321715 ACCCGTGAGGGTTTTGACGAAGATCTGCAT 321744 >seq247 Length=916335 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || || | ||||||||||| |||||||||||||||| | || | ||||| Sbjct 302386 CACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCATCCTC 302445 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 || |||||| || | | || || ||||| || ||| || | || |||||||| Sbjct 302446 CAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTG 302505 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||| || ||||| | | |||||||| | || ||| || | ||| ||||| || Sbjct 302506 AATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTCTT 302565 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || | ||| || || || |||||||| Sbjct 302566 TCCAGTCAAAGTCTTGACGAAGATCTGCAT 302595 >seq112 Length=1448063 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || || | ||||||||||| |||||||||||||||| | || | ||||| Sbjct 1211803 CACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCATCCTC 1211744 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 || |||||| || | | || || ||||| || ||| || | || |||||||| Sbjct 1211743 CAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTG 1211684 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||| || ||||| | | |||||||| | || ||| || | ||| ||||| || Sbjct 1211683 AATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTCTT 1211624 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || | ||| || || || |||||||| Sbjct 1211623 TCCAGTCAAAGTCTTGACGAAGATCTGCAT 1211594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421249880562257