Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12-
14] 257 sequences; 43,359,131 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq196 118 2e-22
seq167 118 2e-22
seq185 109 9e-20
>seq196
Length=385355
Score = 118 bits (130), Expect = 2e-22
Identities = 87/99 (88%), Gaps = 2/99 (2%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|||||||||||||||| ||| |||||| |||||||||||||| ||||| ||||| |||||
Sbjct 3357 GCTAAGCGTCATCGCAAGAT-TCTTCGTGATAACATCCAAGGTATCACAAAGCCTGCTAT 3299
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530
| | ||||| ||||||||||| || ||||||||| ||||
Sbjct 3298 CAGACGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATCTC 3260
>seq167
Length=1180245
Score = 118 bits (130), Expect = 2e-22
Identities = 87/99 (88%), Gaps = 2/99 (2%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|||||||||||||||| ||| |||||| |||||||||||||| ||||| ||||| |||||
Sbjct 23970 GCTAAGCGTCATCGCAAGAT-TCTTCGTGATAACATCCAAGGTATCACAAAGCCTGCTAT 23912
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530
| | ||||| ||||||||||| || ||||||||| ||||
Sbjct 23911 CAGACGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATCTC 23873
>seq185
Length=996995
Score = 109 bits (120), Expect = 9e-20
Identities = 85/99 (86%), Gaps = 2/99 (2%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
|| |||||||| |||| ||| | | |||| ||||||||||| |||||||||||||||||
Sbjct 893434 GCCAAGCGTCACCGCAAGATTT-TGAGAGACAACATCCAAGGTATCACCAAGCCAGCTAT 893376
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530
| | ||||| |||||||||||||| ||||||||| ||||
Sbjct 893375 CAGACGTCTTGCTCGTCGTGGTGGTGTCAAGCGTATCTC 893337
Score = 105 bits (116), Expect = 1e-18
Identities = 121/163 (74%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595
|| |||| ||||||| |||| ||| ||||||| |||||| || || |||| ||| |
Sbjct 893223 TGATCTACGAAGAGACCCGTGGTGTATTGAAGACCTTCCTTGAGGGTGTCATCCGTGACG 893164
Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655
| || ||| || ||||| || || ||||| |||||||||||| | || ||||||| |
Sbjct 893163 CCGTCACCTACACTGAGCATGCCAAGCGTAAAACTGTCACCTCCCTCGACGTCGTCTACG 893104
Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698
| | || || |||||||||| |||| ||||| || ||||
Sbjct 893103 CCCTCAAGCGCCAAGGCCGTACCCTTTACGGTTTCGGTGGTTA 893061
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79074965023101
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |