Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12-
14] 257 sequences; 43,359,131 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq236 269 3e-67
seq182 98.7 1e-15
>seq236
Length=650478
Score = 269 bits (298), Expect = 3e-67
Identities = 1144/1780 (64%), Gaps = 43/1780 (2%)
Strand=Plus/Plus
Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054
||||| ||||| || |||||||||| | ||||| || ||||||||||| || || |||
Sbjct 518183 GTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 518242
Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114
|| | |||| ||| |||||||| || | ||| | || ||| ||
Sbjct 518243 CCCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATG 518302
Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174
|| || ||||| ||||| || || | ||||| || | || || ||||||| |
Sbjct 518303 TGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCATTTGAACA 518362
Query 62175 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 62234
|| || ||| | ||| ||||| | || || |||| | ||| || || |||||| |
Sbjct 518363 ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAATG 518422
Query 62235 TTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTC 62291
|| | | || ||||| || |||||||| || || || | ||||| || | || |
Sbjct 518423 TTGGGAATGTTTTGAATAGAACCACCATCAGCGATGATACGGTTCTTCATGTTGTCTGAC 518482
Query 62292 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 62351
|||||| | ||| | | | | || || || ||||| ||||| |||||||||
Sbjct 518483 CATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCCA 518542
Query 62352 GACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCC 62411
| ||| || | |||| ||| || ||| || || ||||| | |||| || ||
Sbjct 518543 GCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAACCG 518602
Query 62412 AAAATTTGAGCAGTTGATG-CAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 62470
| |||||||| || || || | || |||||||| || || | ||||| || | | |||
Sbjct 518603 AGAATTTGAG-AGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACACC 518661
Query 62471 GTATGTTCTGATTTTATCTTTTAGAGGT-TCCCAATTCCAAAGATCCGACGGTACAACNN 62529
|| | | |||| || | || || | ||||| | |||||| || | ||| |||
Sbjct 518662 GTGTTGTTTGATGG-ATTTCTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTAACTC 518720
Query 62530 NNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATG 62589
||| || || || | | || ||| | || || || || |
Sbjct 518721 CCCACATATCGTATTGAAGTTCGCCCTTCGAGACAGGTGAGCCTTCGTAGGTCTCATAGG 518780
Query 62590 GTCCTTCCTTCTCAGCTAGTTCACAACTCGCC-TCT-AATGCACCGTAATAAATGGTTTC 62647
|| || || ||| | || |||| | | | || ||| ||| ||||| |||||
Sbjct 518781 TACCCAACTCCTTAGCAA--TCTCAACGGACGATGTCAAAGCAGCGTGGTAAATAGTTTC 518838
Query 62648 GAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTAT-CAAATGGATAATTTAAGAGA 62705
|||||| | | || || | |||| ||||| ||| || ||||||| |||| |||||
Sbjct 518839 GAAGATTTGAATGTTGAGGTGCTTG-GCTTC-AGGTGATTCAAATGG-TAATCGAAGAGC 518895
Query 62706 -ATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGA 62764
| ||| || || || | ||||||||||| | | ||||||||| ||| | ||| |
Sbjct 518896 CAAAAAAGCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATT-GC 518954
Query 62765 GATTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGA 62823
|||| | | ||||| | || || || || || || || || || || | |||||||
Sbjct 518955 TCTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTGA 519014
Query 62824 CAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA---TCGCCCATCTAT-TACA 62879
||| |||| || || | || || | ||||| | || | ||| || | ||
Sbjct 519015 CAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTCATTCATGTCCA 519074
Query 62880 AACATGTTCA-AG-GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCAT 62937
| ||||| || |||| || |||| ||||| || || |||| | | | |
Sbjct 519075 CAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAGT 519134
Query 62938 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTAC 62997
||| | || || ||||| | ||| | || || || | || | ||| || |
Sbjct 519135 ATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGC 519194
Query 62998 TCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATT 63057
|||| ||||| || |||||||| ||||| ||||||||| | || || ||| | |||| |
Sbjct 519195 TCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTGAGCCT 519254
Query 63058 CTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA----GATTTGTATCTCCTTTCT 63113
| | ||| | | ||| | | | || || || | || | || || | ||||
Sbjct 519255 CGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCGACCTCTACCTTCCTTCT 519314
Query 63114 CTT---TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCA 63170
| | || |||| | | | ||| |||||||| || | |||| |||| |||
Sbjct 519315 CATAACTCTCATAGAG------AGC-TTCAAACTCGTCGCCATATACATCAGCCAACCCA 519367
Query 63171 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63230
|||||||||| || ||||| | | ||| || ||| | | || || ||||| |||
Sbjct 519368 GGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAAG 519427
Query 63231 AGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 63289
||||| |||||||| | || ||| || ||||| | || | ||| || || ||
Sbjct 519428 AGATCCGGAATCCACA-AGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCGTG 519486
Query 63290 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63349
|||||| || || |||||| | | || ||| | ||||| || || | || | ||
Sbjct 519487 GTTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGC 519546
Query 63350 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63409
| | ||||| || |||||||| || || || | ||||||||| |||||||| ||||
Sbjct 519547 AAATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAAC 519606
Query 63410 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACT 63469
|| | ||| || | || ||||| || |||| |||||||||| ||| || ||| |
Sbjct 519607 TCGTAGCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGT 519666
Query 63470 GGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 63529
|||||| || | ||| ||||| || || || || |||||||||| | || ||
Sbjct 519667 GGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACA 519726
Query 63530 TCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACA 63589
| || | || ||||| ||||| || || ||||| || |||| | || || || ||
Sbjct 519727 TGTCTTGAGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGGAAGCA 519786
Query 63590 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 63649
|| | || | || || || || | ||||| || ||||| || ||
Sbjct 519787 TGATGAAAGCTGTGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAA 519846
Query 63650 CCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAA 63708
|||| | || | || ||||| |||||||| || || ||||| || | ||||
Sbjct 519847 GTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCG-TGAA 519905
Query 63709 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63748
| || || || |||||||| | ||| ||||| || | |||
Sbjct 519906 TACCAACGGCAACACGCATGATCATTTGCTGTGGACGTTC 519945
>seq182
Length=792865
Score = 98.7 bits (108), Expect = 1e-15
Identities = 570/919 (62%), Gaps = 65/919 (7%)
Strand=Plus/Minus
Query 32997 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCC 33056
|| |||||| || || ||||| ||||| || | || ||||| || || || || ||
Sbjct 655214 AGCCATAACACCAGCCTTCTGGTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCC 655155
Query 33057 TTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAA 33116
| | | || || || |||||||| || || || |||| | || || | || |
Sbjct 655154 TGCTAGGGAGATGTTCTCCATGAAGTCGAATGGGTTGGCAGACTTGTACACCTTCTCGT- 655096
Query 33117 TCCCAATTCAGAAATCAAT-CTATCCGCGACGAATTCTATATATGTTTTCATCAT-TTCA 33174
| |||| || || | ||| || ||||| || || ||| ||||||| |||
Sbjct 655095 TACCAAGAGCGACTAGAAGACGATCGGCAACGAACTCGATGTATTGCTTCATCAAGTTCG 655036
Query 33175 CAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGAT 33234
| ||||| || | |||| | ||||||||| | || | ||||||||||| ||
Sbjct 655035 CG-TTCATGCCAAGAAGTGCACAAGGAAGAGCCTCGGTCAAGAATTCTTGTTCGATCTCA 654977
Query 33235 ACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTA 33294
|| || ||||| || | | | || | | | || || | ||| || ||
Sbjct 654976 ACAGCCTCTGTGATGACATCTTGGACAGCCTGCTTGCTTGGACGGTGCTTCAAGTGGGAG 654917
Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354
|| | | || ||||| ||| || ||||| || || | || || || |||||
Sbjct 654916 AAGAGGAGGCACGCGAAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAG 654857
Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414
|| ||||| || | ||| | ||||||||| || ||||| || || |||||||||||||||
Sbjct 654856 AAAGTGAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCA 654797
Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT- 33473
|||||||| || || || |||||||| |||| || | || || | | | |
Sbjct 654796 CTGAAGAAGATGCCCTCAACAGCAGCAAAAGCAACCAGACGCTGAGCAAAGGTAGAGTTT 654737
Query 33474 --GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCA-------- 33523
||| || ||||| | |||||| ||||| ||||| || | ||||| |
Sbjct 654736 TTGTCTTGAATCCATCTGACAGCCCAGTCGGCTTTCTTCTTAATGCAAGGAACTGTAGAG 654677
Query 33524 -------------------------------------------TCGTTTCTATGGCATTA 33540
| || || || |||||
Sbjct 654676 ATAGTTAGGAAATGTATTGTTTAGACCAATGAATGTGACTCACTTGTCTCAATTGCATTG 654617
Query 33541 AAGAGATA-GtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33599
|||||||| ||| || | | || |||| || |||||||| | ||| || |
Sbjct 654616 AAGAGATATGTTCGTTGGGCTTGT-TCCTTAATGTATGTATCGATGAGGAGAGAGTATGT 654558
Query 33600 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33659
||| || || ||||| || || || || || |||||||| || | |||||||| ||
Sbjct 654557 TTCGGAGTGGATGTTCTCCATCATAATTTGGAAACCGTAGAAGCAACGAGCCTCGGGGAT 654498
Query 33660 CTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGC 33719
|| ||||| || || || || | | || || || ||||||||||| |||||
Sbjct 654497 TTGAACTTCACCACTGAAGCGCTCGACAAGGTTCTCGTTGACTATTCCGTCGGATGCTGC 654438
Query 33720 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC----TGGTGTTAGTTTATTCC 33775
|| || || | || || || ||||| || || | | ||| ||| |||||
Sbjct 654437 GAAGAATGCGAGGACGTGAGAGATGAAATAGCGCTCATCATCATTGAGTTTGTT-ATTCC 654379
Query 33776 AATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835
|||| | | || || || | || | ||||| ||||||| || |||||||| ||||
Sbjct 654378 AATCGTGAAGGTCCTTTGACAAGTCGATCTCTTCTGCTGTCCAGAAAGATGCCTCGGCCT 654319
Query 33836 TTTTATACATGTTCCAGAT 33854
|||| ||||| | ||||||
Sbjct 654318 TTTTGTACATTTGCCAGAT 654300
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622945198782120
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