Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12-
14] 257 sequences; 43,359,131 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq247 93.3 4e-14
seq112 93.3 4e-14
seq89 89.7 4e-13
>seq247
Length=916335
Score = 93.3 bits (102), Expect = 4e-14
Identities = 132/186 (71%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 24015 ACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAA 24074
||||| || | || || | || |||||| | |||||||||||| | |||||
Sbjct 303027 ACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCGACAATGTCAAGTCC 302968
Query 24075 AAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAG 24134
||||| ||||| || || || ||||| |||||||| | |||| | || || ||
Sbjct 302967 AAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAACAACGTTTGATCTTCGCTGGTAAA 302908
Query 24135 CAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCAT 24194
||||||||||||| | | | | ||||| || ||||| ||||||||||| || ||||
Sbjct 302907 CAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAGAATCCACCCTTCAC 302848
Query 24195 TTAGTG 24200
|| |||
Sbjct 302847 TTGGTG 302842
Score = 93.3 bits (102), Expect = 4e-14
Identities = 117/161 (73%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 24027 ATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 24086
|| ||| |||| |||||| ||| ||| |||||||| | || || |||||| ||
Sbjct 303295 ATCACCCTCGAGGTCGAGTCCAGCGATACCATCGACAACGTAAAGAGCAAGATTCAGGAT 303236
Query 24087 AAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT 24146
|| || || || || || || |||||| | |||| | || ||||| ||||| ||||||
Sbjct 303235 AAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGCAAACAACTTGAAGAT 303176
Query 24147 GACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTAC 24187
| | | | | | ||||| || ||||||||||| || |||||
Sbjct 303175 GGCCGTACCTTGAGCGACTACAACATTCAAAAGGAGTCTAC 303135
>seq112
Length=1448063
Score = 93.3 bits (102), Expect = 4e-14
Identities = 117/161 (73%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 24027 ATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 24086
|| ||| |||| |||||| ||| ||| |||||||| | || || |||||| ||
Sbjct 1210894 ATCACCCTCGAGGTCGAGTCCAGCGATACCATCGACAACGTAAAGAGCAAGATTCAGGAT 1210953
Query 24087 AAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT 24146
|| || || || || || || |||||| | |||| | || ||||| ||||| ||||||
Sbjct 1210954 AAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGCAAACAACTTGAAGAT 1211013
Query 24147 GACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTAC 24187
| | | | | | ||||| || ||||||||||| || |||||
Sbjct 1211014 GGCCGTACCTTGAGCGACTACAACATTCAAAAGGAGTCTAC 1211054
Score = 93.3 bits (102), Expect = 4e-14
Identities = 132/186 (71%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 24015 ACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAA 24074
||||| || | || || | || |||||| | |||||||||||| | |||||
Sbjct 1211162 ACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCGACAATGTCAAGTCC 1211221
Query 24075 AAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAG 24134
||||| ||||| || || || ||||| |||||||| | |||| | || || ||
Sbjct 1211222 AAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAACAACGTTTGATCTTCGCTGGTAAA 1211281
Query 24135 CAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCAT 24194
||||||||||||| | | | | ||||| || ||||| ||||||||||| || ||||
Sbjct 1211282 CAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAGAATCCACCCTTCAC 1211341
Query 24195 TTAGTG 24200
|| |||
Sbjct 1211342 TTGGTG 1211347
>seq89
Length=741344
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | || || ||||| | || || ||| | || ||| |||| || || ||
Sbjct 321744 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 321685
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|| |||||||| | ||||| ||||| ||||| || || || || || |||||
Sbjct 321684 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCAG 321625
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
|| | ||||| | || |||||||||||||||||||| | | | | ||| || |||
Sbjct 321624 CAACGTCTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAAC 321565
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199
|| ||||| ||||| || |||| || ||
Sbjct 321564 ATCCAAAAGGAATCCACTCTTCACTTGGT 321536
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429934653359835
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |