Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12- 14] 257 sequences; 43,359,131 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq247 93.3 4e-14 seq112 93.3 4e-14 seq89 89.7 4e-13 >seq247 Length=916335 Score = 93.3 bits (102), Expect = 4e-14 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 24015 ACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAA 24074 ||||| || | || || | || |||||| | |||||||||||| | ||||| Sbjct 303027 ACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCGACAATGTCAAGTCC 302968 Query 24075 AAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAG 24134 ||||| ||||| || || || ||||| |||||||| | |||| | || || || Sbjct 302967 AAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAACAACGTTTGATCTTCGCTGGTAAA 302908 Query 24135 CAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCAT 24194 ||||||||||||| | | | | ||||| || ||||| ||||||||||| || |||| Sbjct 302907 CAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAGAATCCACCCTTCAC 302848 Query 24195 TTAGTG 24200 || ||| Sbjct 302847 TTGGTG 302842 Score = 93.3 bits (102), Expect = 4e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 24027 ATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 24086 || ||| |||| |||||| ||| ||| |||||||| | || || |||||| || Sbjct 303295 ATCACCCTCGAGGTCGAGTCCAGCGATACCATCGACAACGTAAAGAGCAAGATTCAGGAT 303236 Query 24087 AAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT 24146 || || || || || || || |||||| | |||| | || ||||| ||||| |||||| Sbjct 303235 AAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGCAAACAACTTGAAGAT 303176 Query 24147 GACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTAC 24187 | | | | | | ||||| || ||||||||||| || ||||| Sbjct 303175 GGCCGTACCTTGAGCGACTACAACATTCAAAAGGAGTCTAC 303135 >seq112 Length=1448063 Score = 93.3 bits (102), Expect = 4e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 24027 ATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGAC 24086 || ||| |||| |||||| ||| ||| |||||||| | || || |||||| || Sbjct 1210894 ATCACCCTCGAGGTCGAGTCCAGCGATACCATCGACAACGTAAAGAGCAAGATTCAGGAT 1210953 Query 24087 AAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT 24146 || || || || || || || |||||| | |||| | || ||||| ||||| |||||| Sbjct 1210954 AAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGGCAAACAACTTGAAGAT 1211013 Query 24147 GACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTAC 24187 | | | | | | ||||| || ||||||||||| || ||||| Sbjct 1211014 GGCCGTACCTTGAGCGACTACAACATTCAAAAGGAGTCTAC 1211054 Score = 93.3 bits (102), Expect = 4e-14 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 24015 ACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAA 24074 ||||| || | || || | || |||||| | |||||||||||| | ||||| Sbjct 1211162 ACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCGACAATGTCAAGTCC 1211221 Query 24075 AAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAG 24134 ||||| ||||| || || || ||||| |||||||| | |||| | || || || Sbjct 1211222 AAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAACAACGTTTGATCTTCGCTGGTAAA 1211281 Query 24135 CAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCAT 24194 ||||||||||||| | | | | ||||| || ||||| ||||||||||| || |||| Sbjct 1211282 CAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAGAATCCACCCTTCAC 1211341 Query 24195 TTAGTG 24200 || ||| Sbjct 1211342 TTGGTG 1211347 >seq89 Length=741344 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | || || ||| | || ||| |||| || || || Sbjct 321744 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 321685 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || |||||||| | ||||| ||||| ||||| || || || || || ||||| Sbjct 321684 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCAG 321625 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | ||||| | || |||||||||||||||||||| | | | | ||| || ||| Sbjct 321624 CAACGTCTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAAC 321565 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 || ||||| ||||| || |||| || || Sbjct 321564 ATCCAAAAGGAATCCACTCTTCACTTGGT 321536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429934653359835