Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12-
14] 257 sequences; 43,359,131 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq247 82.4 6e-11
seq112 82.4 6e-11
>seq247
Length=916335
Score = 82.4 bits (90), Expect = 6e-11
Identities = 133/189 (70%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| || | ||| || || ||||||||||| |||||||||||| || ||| | | ||
Sbjct 303120 AGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTCAAGGTACGGCCATCT 303179
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843
|| | ||||||||| || | || | |||||||||||| || | ||||| || ||
Sbjct 303180 TCAAGTTGTTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATCC 303239
Query 16844 GCAAT-TTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902
||| ||||| ||| || | | | | || |||| || ||| || | |||||||||
Sbjct 303240 TGAATCTTGCT-CTTTACGTTGTCGATGGTATCGCTGGACTCGACCTCGAGGGTGATGGT 303298
Query 16903 TTTTCCGGT 16911
|| |||||
Sbjct 303299 CTTGCCGGT 303307
>seq112
Length=1448063
Score = 82.4 bits (90), Expect = 6e-11
Identities = 133/189 (70%), Gaps = 2/189 (1%)
Strand=Plus/Minus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| || | ||| || || ||||||||||| |||||||||||| || ||| | | ||
Sbjct 1211069 AGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTCAAGGTACGGCCATCT 1211010
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843
|| | ||||||||| || | || | |||||||||||| || | ||||| || ||
Sbjct 1211009 TCAAGTTGTTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATCC 1210950
Query 16844 GCAAT-TTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902
||| ||||| ||| || | | | | || |||| || ||| || | |||||||||
Sbjct 1210949 TGAATCTTGCT-CTTTACGTTGTCGATGGTATCGCTGGACTCGACCTCGAGGGTGATGGT 1210891
Query 16903 TTTTCCGGT 16911
|| |||||
Sbjct 1210890 CTTGCCGGT 1210882
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405086731188430
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |