Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12-
14] 257 sequences; 43,359,131 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq182 147 2e-30
>seq182
Length=792865
Score = 147 bits (162), Expect = 2e-30
Identities = 205/287 (71%), Gaps = 3/287 (1%)
Strand=Plus/Minus
Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421
|||||||||||||| | ||||| || |||| || |||| |||||||| |||||||
Sbjct 654586 ATGTATGTATCGATGAGGAGAGAGTATGTTTCGGAGTGGATGTTCTCCATCATAATTTGG 654527
Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481
|| |||||||| || | ||| || | ||| || ||||| | || | ||| || ||
Sbjct 654526 AAACCGTAGAAGCAACGAGCCTCGGGGATTTGAACTTCACCACTGAAGCGCTCGACAAGG 654467
Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541
|| || |||||||| || ||||||||||| || || || | | || || ||||
Sbjct 654466 TTCTCGTTGACTATTCCGTCGGATGCTGCGAAGAATGCGAGGACGTGAGAGATGAAATAG 654407
Query 93542 TTCTCATCATCTTTAAG---CTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCT 93598
||||||||| || || |||| ||||||| || || ||||| | |||| |||
Sbjct 654406 CGCTCATCATCATTGAGTTTGTTATTCCAATCGTGAAGGTCCTTTGACAAGTCGATCTCT 654347
Query 93599 TCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATAT 93645
|| | ||||| || ||||| || || ||||||||||| | ||| ||
Sbjct 654346 TCTGCTGTCCAGAAAGATGCCTCGGCCTTTTTGTACATTTGCCAGAT 654300
Score = 105 bits (116), Expect = 7e-18
Identities = 167/237 (70%), Gaps = 2/237 (1%)
Strand=Plus/Minus
Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150
|||||| ||||||||||| | |||||| || || || || | ||||||| ||| || |
Sbjct 654908 GCACGCGAAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGAAAGTGAG 654849
Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210
||| | | || || || ||||||||||| || || ||||| || ||| || ||
Sbjct 654848 ACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCACTGAAGAA 654789
Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT 93270
|| || || || || ||||| || || | ||| | ||||| | | | || | |
Sbjct 654788 GATGCCCTCAACAGCAGCAAAAGCAACCAGACGCTGAGCAAAGGTAG-AGTTTTTGTCTT 654730
Query 93271 G-ATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAG 93326
| |||||| | | |||||| |||||||| |||||||| ||||| | ||| |||||
Sbjct 654729 GAATCCATCTGACAGCCCAGTCGGCTTTCTTCTTAATGCAAGGAACTGTAGAGATAG 654673
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556859011084680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |