Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12- 14] 257 sequences; 43,359,131 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq111 87.8 4e-12 >seq111 Length=1993158 Score = 87.8 bits (96), Expect = 4e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||||||||| || ||||| |||| | || ||||||| |||||||| || || Sbjct 1824481 GGTGAGGATCTTTGCAACTGTACTTTCAACTTGGCCTATGGTGCTAAGATTCTTCTCAAT 1824540 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | |||| | ||||||||| | || |||||||| ||| || || || | Sbjct 1824541 CAAACTCACCTCCGTCTGAAGCGTGGCCAACGATATGGTCTTTGCGGACCTAACGGTTCC 1824600 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| |||||| ||||| ||||| |||| || | ||||| || || || Sbjct 1824601 GGAAAGTCCACTCTTATGCGTGCCATCAACAACGAACAAGTCGAAGGTTTCCCCAAGAAG 1824660 Query 279525 TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 |||||| | ||| |||| || |||||||| ||||||| Sbjct 1824661 AGTGAGGTTAAGACTGTGTTCGTTGAGCACGATCTCGACTC 1824701 Score = 87.8 bits (96), Expect = 4e-12 Identities = 112/152 (74%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 280672 CCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAG 280731 |||| | ||| ||||| | ||||| |||||||||| || ||||||||||| | Sbjct 1825853 CCAACTTTGGTTTGGACGCTGAGTTGGTTTCTCACTCTCGTATGTTGGGTCTTTCTGGTG 1825912 Query 280732 GCCAGAAGGTCAAACTTGTCATCGGAGC-AGCTCTGTGGCAACACCCTCACGTGATCGTT 280790 | ||| ||||| |||| ||| || |||| |||||||| ||||| ||||||| Sbjct 1825913 GACAGCGTGTCAAGGTTGTTCTCGCTGCTTGCTC-GTGGCAACGTCCTCATTTGATCGTC 1825971 Query 280791 CTCGACGAGCCTACCAACTATCTGGACCGCGA 280822 || ||||| ||||||||||| ||||||| || Sbjct 1825972 CTTGACGAACCTACCAACTACTTGGACCGTGA 1826003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027833415526137