Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12-
14] 257 sequences; 43,359,131 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq111 87.8 4e-12
>seq111
Length=1993158
Score = 87.8 bits (96), Expect = 4e-12
Identities = 152/221 (69%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404
||||||||||| || ||||| |||| | || ||||||| |||||||| || ||
Sbjct 1824481 GGTGAGGATCTTTGCAACTGTACTTTCAACTTGGCCTATGGTGCTAAGATTCTTCTCAAT 1824540
Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464
|| | |||| | ||||||||| | || |||||||| ||| || || || |
Sbjct 1824541 CAAACTCACCTCCGTCTGAAGCGTGGCCAACGATATGGTCTTTGCGGACCTAACGGTTCC 1824600
Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524
|| ||| |||||| ||||| ||||| |||| || | ||||| || || ||
Sbjct 1824601 GGAAAGTCCACTCTTATGCGTGCCATCAACAACGAACAAGTCGAAGGTTTCCCCAAGAAG 1824660
Query 279525 TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565
|||||| | ||| |||| || |||||||| |||||||
Sbjct 1824661 AGTGAGGTTAAGACTGTGTTCGTTGAGCACGATCTCGACTC 1824701
Score = 87.8 bits (96), Expect = 4e-12
Identities = 112/152 (74%), Gaps = 2/152 (1%)
Strand=Plus/Plus
Query 280672 CCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAG 280731
|||| | ||| ||||| | ||||| |||||||||| || ||||||||||| |
Sbjct 1825853 CCAACTTTGGTTTGGACGCTGAGTTGGTTTCTCACTCTCGTATGTTGGGTCTTTCTGGTG 1825912
Query 280732 GCCAGAAGGTCAAACTTGTCATCGGAGC-AGCTCTGTGGCAACACCCTCACGTGATCGTT 280790
| ||| ||||| |||| ||| || |||| |||||||| ||||| |||||||
Sbjct 1825913 GACAGCGTGTCAAGGTTGTTCTCGCTGCTTGCTC-GTGGCAACGTCCTCATTTGATCGTC 1825971
Query 280791 CTCGACGAGCCTACCAACTATCTGGACCGCGA 280822
|| ||||| ||||||||||| ||||||| ||
Sbjct 1825972 CTTGACGAACCTACCAACTACTTGGACCGTGA 1826003
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027833415526137
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |