Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12- 14] 257 sequences; 43,359,131 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq89 179 7e-40 seq247 176 8e-39 seq112 176 8e-39 >seq89 Length=741344 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || ||||| || ||||||||||| || ||||| Sbjct 321518 CCACCACGTAGACGAAGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAA 321577 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | ||||| |||||||| || || | ||| || || ||||| Sbjct 321578 AGGGTGCGTCCATCTTCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGG 321637 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | |||||| |||||||| || | ||||| || Sbjct 321638 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACC 321697 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||||||| ||||||||||| |||||||| |||||||| Sbjct 321698 TCGAGGGTGATGGTTTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 321744 >seq247 Length=916335 Score = 176 bits (194), Expect = 8e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | |||||||| | ||| ||| || || ||||| ||||| || Sbjct 302369 CCGCCACGAAGACGAAGCACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAA 302428 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || || ||||| || |||||||| || || || || | || |||||||| ||||| Sbjct 302429 AGAGTTCTGCCATCCTCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGG 302488 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||||||||||||||||| |||||| || ||||| |||| ||||| ||| Sbjct 302489 ATACCCTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCCACT 302548 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || ||||| ||||| || | ||||||||||| |||||||| Sbjct 302549 TCCAATGTAATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 302595 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | ||||| || || ||||||||||| |||||||| || || || Sbjct 302597 CCACCACGGAGACGAAGGACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGAT 302656 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | ||||| || || || || || | ||| ||||| ||||| Sbjct 302657 AGAGTGCGGCCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGG 302716 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| ||||| ||||||| || ||| |||||||| |||| || || || Sbjct 302717 ATACCCTCCTTATCTTGGATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCAACC 302776 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||| || ||||| || || ||||||||||| || ||||| Sbjct 302777 TCCAATGTGATTGTCTTTCCGGTAAGTGTCTTGACGAAGATTTGCAT 302823 Score = 149 bits (164), Expect = 1e-30 Identities = 163/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | |||||||| || ||||| |||||||||||||| || ||| Sbjct 302825 CCACCACGAAGGCGGAGCACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTC 302884 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | || || || ||||| || | | |||||| || || ||| Sbjct 302885 AGGGTGCGACCATCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGA 302944 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | |||||| ||||||||||| | || || || Sbjct 302945 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCGACC 303004 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 || | |||||||| || || ||||| |||||||||| Sbjct 303005 TCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACGA 303041 >seq112 Length=1448063 Score = 176 bits (194), Expect = 8e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | |||||||| | ||| ||| || || ||||| ||||| || Sbjct 1211820 CCGCCACGAAGACGAAGCACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAA 1211761 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || || ||||| || |||||||| || || || || | || |||||||| ||||| Sbjct 1211760 AGAGTTCTGCCATCCTCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGG 1211701 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||||||||||||||||| |||||| || ||||| |||| ||||| ||| Sbjct 1211700 ATACCCTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCCACT 1211641 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || ||||| ||||| || | ||||||||||| |||||||| Sbjct 1211640 TCCAATGTAATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 1211594 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | ||||| || || ||||||||||| |||||||| || || || Sbjct 1211592 CCACCACGGAGACGAAGGACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGAT 1211533 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | ||||| || || || || || | ||| ||||| ||||| Sbjct 1211532 AGAGTGCGGCCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGG 1211473 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| ||||| ||||||| || ||| |||||||| |||| || || || Sbjct 1211472 ATACCCTCCTTATCTTGGATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCAACC 1211413 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||| || ||||| || || ||||||||||| || ||||| Sbjct 1211412 TCCAATGTGATTGTCTTTCCGGTAAGTGTCTTGACGAAGATTTGCAT 1211366 Score = 149 bits (164), Expect = 1e-30 Identities = 163/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | |||||||| || ||||| |||||||||||||| || ||| Sbjct 1211364 CCACCACGAAGGCGGAGCACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTC 1211305 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | || || || ||||| || | | |||||| || || ||| Sbjct 1211304 AGGGTGCGACCATCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGA 1211245 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | |||||| ||||||||||| | || || || Sbjct 1211244 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCGACC 1211185 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 || | |||||||| || || ||||| |||||||||| Sbjct 1211184 TCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACGA 1211148 Score = 120 bits (132), Expect = 6e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 ||||| ||||| || || || || || | || || || | ||||| |||||||| || Sbjct 15702 TTTTGAATGTTGTAGTCTGAAAGGGTTCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATC 15643 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | | ||||||||| || ||||| || |||||||| || ||||| | |||||| || Sbjct 15642 AAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 15583 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 || || || | || || || || | ||||||||| |||||||| |||||||||||||| Sbjct 15582 ATAGTATCAGAGGACTCGACCTCAAGGGTGATGGTCTTTCCCGTAAGGGTCTTGACGAA 15524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921619439288040