Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12-
14] 257 sequences; 43,359,131 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq247 132 4e-26
seq112 132 4e-26
>seq247
Length=916335
Score = 132 bits (146), Expect = 4e-26
Identities = 153/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||||||||| || | | || | ||| | ||||| || |||||||||||||| |||
Sbjct 303102 ATACCGCCACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCG 303161
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|||| ||||| ||||||||||||||| || ||| |||| | ||||||||||||||
Sbjct 303162 CTCAAGGTACGGCCATCTTCAAGTTGTTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGG 303221
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||| || || || || |||||| |||| | || | ||| ||| |||| |||
Sbjct 303222 GGAATTCCCTCCTTATCCTGAATCTTGCTCTTTACGTTGTCGATGGTATCGCTGGACTCG 303281
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGT 114358
|| || | ||| | || ||||||||
Sbjct 303282 ACCTCGAGGGTGATGGTCTTGCCGGT 303307
Score = 127 bits (140), Expect = 2e-24
Identities = 159/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | | || || || | || ||||||||||| |||||||| |||
Sbjct 302822 ATACCACCACGAAGGCGGAGCACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCG 302881
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|||| || ||| |||||| ||||||||||||||| |||| | ||| ||||| ||||||
Sbjct 302882 CTCAGGGTGCGACCATCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGA 302941
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||| || || ||||| ||||| || | | || | |||||||| || |||
Sbjct 302942 GGAATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCG 303001
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 114370
|| || | || | || ||||| || ||||| || ||
Sbjct 303002 ACCTCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTGAC 303039
>seq112
Length=1448063
Score = 132 bits (146), Expect = 4e-26
Identities = 153/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||||||||| || | | || | ||| | ||||| || |||||||||||||| |||
Sbjct 1211087 ATACCGCCACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCG 1211028
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|||| ||||| ||||||||||||||| || ||| |||| | ||||||||||||||
Sbjct 1211027 CTCAAGGTACGGCCATCTTCAAGTTGTTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGG 1210968
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||| || || || || |||||| |||| | || | ||| ||| |||| |||
Sbjct 1210967 GGAATTCCCTCCTTATCCTGAATCTTGCTCTTTACGTTGTCGATGGTATCGCTGGACTCG 1210908
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGT 114358
|| || | ||| | || ||||||||
Sbjct 1210907 ACCTCGAGGGTGATGGTCTTGCCGGT 1210882
Score = 127 bits (140), Expect = 2e-24
Identities = 159/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | | || || || | || ||||||||||| |||||||| |||
Sbjct 1211367 ATACCACCACGAAGGCGGAGCACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCG 1211308
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|||| || ||| |||||| ||||||||||||||| |||| | ||| ||||| ||||||
Sbjct 1211307 CTCAGGGTGCGACCATCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGA 1211248
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||| || || ||||| ||||| || | | || | |||||||| || |||
Sbjct 1211247 GGAATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCG 1211188
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 114370
|| || | || | || ||||| || ||||| || ||
Sbjct 1211187 ACCTCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTGAC 1211150
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420133084060284
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |