Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12- 14] 257 sequences; 43,359,131 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq182 176 9e-39 >seq182 Length=792865 Score = 176 bits (194), Expect = 9e-39 Identities = 356/517 (69%), Gaps = 11/517 (2%) Strand=Plus/Plus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAAC 42691 || ||||| |||||||| || |||||||| ||| ||||| | || | | | | || Sbjct 654687 CCTTGCATTAAGAAGAAAGCCGACTGGGCTGTCAGATGGATTCA-AGACAAAAACTCTAC 654745 Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751 || | || | ||||| || ||| | || || ||||||||||||||| || | || Sbjct 654746 CTTTGCTCAGCGTCTGGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTCAGTGGATCATT 654805 Query 42752 CGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGA 42811 ||| || ||||||||||||||| || | | |||| | || ||||| ||||| || || Sbjct 654806 CGCTTCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACTTTCTCCAATGA 654865 Query 42812 ACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCA 42871 |||||| | | || || || || |||| ||||| || |||||||| ||||| ||| Sbjct 654866 GCTCATCTCCCGTGATGAAGGTCTCCATACCGACTTCGCGTGCCTCCTCTTCTC---CCA 654922 Query 42872 CCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGAT 42931 | | | |||| || ||| || |||| | ||||||| ||||| || ||||| Sbjct 654923 CTTGAAGCACCGTCCAAGCAAGCAGGCTGTCCAAGATGTCATCACAGAGGCTGTTGAGAT 654982 Query 42932 CGAGAAGGAGTTCCTCACGCAGTCGCTGCC-CGTGTCCCTGGTCGGCATGAACCACGACC 42990 ||| | || ||| | || || | || || ||| | || | ||||||||| || Sbjct 654983 CGAACAAGAATTCTTGACCGAGGCTCTTCCTTGTG-CACTTCTTGGCATGAACGCGAACT 655041 Query 42991 TCATG-TGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTCAG 43048 | ||| |||| |||||| ||| ||| ||||| | ||| || || | ||| || Sbjct 655042 TGATGAAGCAA-TACATCGAGTTCGTTGCCGATCGTCTTCTAGTCGCTCTTGGTAACGAG 655100 Query 43049 CCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAA 43108 | | ||||| | | ||| |||||||| |||||||||||||| | | ||||| Sbjct 655101 AAG-GTGTACAAGTCTGCCAACCCATTCGACTTCATGGAGAACATCTCCCTAGCAGGCAA 655159 Query 43109 GACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 ||| ||||| ||||||||| | || | ||||||||| Sbjct 655160 GACAAACTTCTTCGAGAAGAGAGTTGGTGACTACCAG 655196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944336166310320