Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12-
14] 257 sequences; 43,359,131 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq89 149 1e-30
seq247 125 2e-23
seq112 125 2e-23
seq182 87.8 4e-12
>seq89
Length=741344
Score = 149 bits (164), Expect = 1e-30
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | ||| || | |||| ||| ||| |||||||| || |||||||
Sbjct 321518 CCACCACGTAGACGAAGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAA 321577
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| |||||||| ||||| | ||| || || |||||||||||||| || ||| | ||||
Sbjct 321578 AGGGTGCGTCCATCTTCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGG 321637
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
||||| || || |||||||| || | || || || || || | ||| ||||| ||
Sbjct 321638 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACC 321697
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| ||||| || || || || || || |||||||| ||||||||
Sbjct 321698 TCGAGGGTGATGGTTTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 321744
>seq247
Length=916335
Score = 125 bits (138), Expect = 2e-23
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | ||| || | ||| | ||| ||||| ||||| || ||||| |
Sbjct 302597 CCACCACGGAGACGAAGGACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGAT 302656
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || || || | ||| || || || ||||| ||||| || || ||||
Sbjct 302657 AGAGTGCGGCCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGG 302716
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || ||||| ||||| || | ||||||||| || || | ||| ||| || ||
Sbjct 302717 ATACCCTCCTTATCTTGGATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCAACC 302776
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| | ||||| ||||| ||||| || ||||||||||| || |||||
Sbjct 302777 TCCAATGTGATTGTCTTTCCGGTAAGTGTCTTGACGAAGATTTGCAT 302823
Score = 122 bits (134), Expect = 2e-22
Identities = 157/217 (72%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | || || | |||| ||| |||||||||||| || ||||||
Sbjct 302825 CCACCACGAAGGCGGAGCACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTC 302884
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || ||||| | |||||| || |||||||||| ||| |||||| ||
Sbjct 302885 AGGGTGCGACCATCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGA 302944
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || |||||||| || | || || || || || | ||| ||| || ||
Sbjct 302945 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCGACC 303004
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463
|| || ||||| ||||| || || |||||||||||||
Sbjct 303005 TCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACGA 303041
Score = 105 bits (116), Expect = 2e-17
Identities = 141/192 (73%), Gaps = 8/192 (4%)
Strand=Plus/Plus
Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321
|| |||||||| | || || ||||| || || |||||| | || || || |||
Sbjct 303120 AGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTCAAGGTACGGCCATCT 303179
Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378
|| | |||||| ||||||||||||| |||||||| || ||| ||||| || |||
Sbjct 303180 TCAAGTTGTTTGCCTGCGAAGATCAAGCGCTGTTG---GTCCGGGGGAATTCCCTCCTTA 303236
Query 288379 TCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGAT 288437
||||| || || ||| || ||||| || || | |||||| || || || ||||| |||||
Sbjct 303237 TCCTGAATCTT-GCTCTTTACGTTGTCGATGGTATCGCTGGACTCGACCTCGAGGGTGAT 303295
Query 288438 CGTCTTCCCGGT 288449
||||| |||||
Sbjct 303296 GGTCTTGCCGGT 303307
Score = 95.1 bits (104), Expect = 3e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303
|| || || || || | ||| || | || | ||||| || || || || || || ||
Sbjct 302366 TGACCGCCACGAAGACGAAGCACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCA 302425
Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363
| || || | || || || || || ||||| || ||||||| |||||||| |
Sbjct 302426 GAAAGAGTTCTGCCATCCTCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGT 302485
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
||||| || || || || || || || | || || || || || | ||| ||||||
Sbjct 302486 GGGATACCCTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCC 302545
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| | || || ||||| || |||| |||||||||||| ||||||||
Sbjct 302546 ACTTCCAATGTAATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 302595
>seq112
Length=1448063
Score = 125 bits (138), Expect = 2e-23
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | ||| || | ||| | ||| ||||| ||||| || ||||| |
Sbjct 1211592 CCACCACGGAGACGAAGGACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGAT 1211533
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || || || | ||| || || || ||||| ||||| || || ||||
Sbjct 1211532 AGAGTGCGGCCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGG 1211473
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || ||||| ||||| || | ||||||||| || || | ||| ||| || ||
Sbjct 1211472 ATACCCTCCTTATCTTGGATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCAACC 1211413
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| | ||||| ||||| ||||| || ||||||||||| || |||||
Sbjct 1211412 TCCAATGTGATTGTCTTTCCGGTAAGTGTCTTGACGAAGATTTGCAT 1211366
Score = 122 bits (134), Expect = 2e-22
Identities = 157/217 (72%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | || || | |||| ||| |||||||||||| || ||||||
Sbjct 1211364 CCACCACGAAGGCGGAGCACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTC 1211305
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || ||||| | |||||| || |||||||||| ||| |||||| ||
Sbjct 1211304 AGGGTGCGACCATCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGA 1211245
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || |||||||| || | || || || || || | ||| ||| || ||
Sbjct 1211244 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCGACC 1211185
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463
|| || ||||| ||||| || || |||||||||||||
Sbjct 1211184 TCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACGA 1211148
Score = 105 bits (116), Expect = 2e-17
Identities = 141/192 (73%), Gaps = 8/192 (4%)
Strand=Plus/Minus
Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321
|| |||||||| | || || ||||| || || |||||| | || || || |||
Sbjct 1211069 AGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTCAAGGTACGGCCATCT 1211010
Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378
|| | |||||| ||||||||||||| |||||||| || ||| ||||| || |||
Sbjct 1211009 TCAAGTTGTTTGCCTGCGAAGATCAAGCGCTGTTG---GTCCGGGGGAATTCCCTCCTTA 1210953
Query 288379 TCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGAT 288437
||||| || || ||| || ||||| || || | |||||| || || || ||||| |||||
Sbjct 1210952 TCCTGAATCTT-GCTCTTTACGTTGTCGATGGTATCGCTGGACTCGACCTCGAGGGTGAT 1210894
Query 288438 CGTCTTCCCGGT 288449
||||| |||||
Sbjct 1210893 GGTCTTGCCGGT 1210882
Score = 104 bits (114), Expect = 6e-17
Identities = 133/182 (73%), Gaps = 6/182 (3%)
Strand=Plus/Minus
Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345
||||| || || ||||| | || || |||||||| || | ||| ||||| |||||||||
Sbjct 15702 TTTTGAATGTTGTAGTCTGAAAGGGTTCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATC 15643
Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
| ||| ||||| || ||| ||||| || || |||||||| || | || || ||
Sbjct 15642 AAACGTTGTTGG---TCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTG 15586
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| |||| ||| || || || || || ||||| ||||| || || || |||||||||
Sbjct 15585 TCAATAGTATCAGAGGACTCGACCTCAAGGGTGATGGTCTTTCCCGTAAGGGTCTTGACG 15526
Query 288463 AA 288464
||
Sbjct 15525 AA 15524
Score = 95.1 bits (104), Expect = 3e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303
|| || || || || | ||| || | || | ||||| || || || || || || ||
Sbjct 1211823 TGACCGCCACGAAGACGAAGCACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCA 1211764
Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363
| || || | || || || || || ||||| || ||||||| |||||||| |
Sbjct 1211763 GAAAGAGTTCTGCCATCCTCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGT 1211704
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
||||| || || || || || || || | || || || || || | ||| ||||||
Sbjct 1211703 GGGATACCCTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCC 1211644
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| | || || ||||| || |||| |||||||||||| ||||||||
Sbjct 1211643 ACTTCCAATGTAATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 1211594
>seq182
Length=792865
Score = 87.8 bits (96), Expect = 4e-12
Identities = 159/231 (69%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 269112 CGAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCT 269171
|||| |||| ||| | || ||| | || ||| | | | || ||||| || | |
Sbjct 654983 CGAACAAGAATTCTTGACCGAGGCTCTTCCTTGTGCACTTCTTGGCATGAACGCGAACTT 655042
Query 269172 CATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTC--GGTTATGAG 269229
||||| ||||| ||||| ||||| || |||||| |||| | | ||| ||| | |||
Sbjct 655043 GATGAAGCAATACATCGAGTTCGTTGCCGATCGT--CTTCTAGTCGCTCTTGGTAACGAG 655100
Query 269230 AAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAG 269289
|| |||||||| || || || |||| ||| ||||| || || || | ||| |||
Sbjct 655101 AAGGTGTACAAGTCTGCCAACCCATTCGACTTCATGGAGAACATCTCCCTAGCAGGCAAG 655160
Query 269290 ACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAACGTCCTGGTGTAATG 269340
|| ||||||||||| ||| | || | ||||| || ||||||| |||
Sbjct 655161 ACAAACTTCTTCGAGAAGAGAGTTGGTGACTACCAGAAGGCTGGTGTTATG 655211
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179650515619246
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