Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12- 14] 257 sequences; 43,359,131 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq89 149 1e-30 seq247 125 2e-23 seq112 125 2e-23 seq182 87.8 4e-12 >seq89 Length=741344 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || | |||| ||| ||| |||||||| || ||||||| Sbjct 321518 CCACCACGTAGACGAAGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAA 321577 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || |||||||| ||||| | ||| || || |||||||||||||| || ||| | |||| Sbjct 321578 AGGGTGCGTCCATCTTCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGG 321637 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||| || || |||||||| || | || || || || || | ||| ||||| || Sbjct 321638 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACC 321697 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| || || || || || || |||||||| |||||||| Sbjct 321698 TCGAGGGTGATGGTTTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 321744 >seq247 Length=916335 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || | ||| | ||| ||||| ||||| || ||||| | Sbjct 302597 CCACCACGGAGACGAAGGACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGAT 302656 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | ||| || || || ||||| ||||| || || |||| Sbjct 302657 AGAGTGCGGCCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGG 302716 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||| ||||| || | ||||||||| || || | ||| ||| || || Sbjct 302717 ATACCCTCCTTATCTTGGATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCAACC 302776 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| ||||| ||||| || ||||||||||| || ||||| Sbjct 302777 TCCAATGTGATTGTCTTTCCGGTAAGTGTCTTGACGAAGATTTGCAT 302823 Score = 122 bits (134), Expect = 2e-22 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || | |||| ||| |||||||||||| || |||||| Sbjct 302825 CCACCACGAAGGCGGAGCACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTC 302884 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | |||||| || |||||||||| ||| |||||| || Sbjct 302885 AGGGTGCGACCATCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGA 302944 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || | || || || || || | ||| ||| || || Sbjct 302945 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCGACC 303004 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 || || ||||| ||||| || || ||||||||||||| Sbjct 303005 TCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACGA 303041 Score = 105 bits (116), Expect = 2e-17 Identities = 141/192 (73%), Gaps = 8/192 (4%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || |||||||| | || || ||||| || || |||||| | || || || ||| Sbjct 303120 AGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTCAAGGTACGGCCATCT 303179 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378 || | |||||| ||||||||||||| |||||||| || ||| ||||| || ||| Sbjct 303180 TCAAGTTGTTTGCCTGCGAAGATCAAGCGCTGTTG---GTCCGGGGGAATTCCCTCCTTA 303236 Query 288379 TCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGAT 288437 ||||| || || ||| || ||||| || || | |||||| || || || ||||| ||||| Sbjct 303237 TCCTGAATCTT-GCTCTTTACGTTGTCGATGGTATCGCTGGACTCGACCTCGAGGGTGAT 303295 Query 288438 CGTCTTCCCGGT 288449 ||||| ||||| Sbjct 303296 GGTCTTGCCGGT 303307 Score = 95.1 bits (104), Expect = 3e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || || || || || | ||| || | || | ||||| || || || || || || || Sbjct 302366 TGACCGCCACGAAGACGAAGCACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCA 302425 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | || || | || || || || || ||||| || ||||||| |||||||| | Sbjct 302426 GAAAGAGTTCTGCCATCCTCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGT 302485 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || || || || || || | || || || || || | ||| |||||| Sbjct 302486 GGGATACCCTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCC 302545 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | || || ||||| || |||| |||||||||||| |||||||| Sbjct 302546 ACTTCCAATGTAATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 302595 >seq112 Length=1448063 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || | ||| | ||| ||||| ||||| || ||||| | Sbjct 1211592 CCACCACGGAGACGAAGGACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGAT 1211533 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | ||| || || || ||||| ||||| || || |||| Sbjct 1211532 AGAGTGCGGCCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGG 1211473 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||| ||||| || | ||||||||| || || | ||| ||| || || Sbjct 1211472 ATACCCTCCTTATCTTGGATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCAACC 1211413 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| ||||| ||||| || ||||||||||| || ||||| Sbjct 1211412 TCCAATGTGATTGTCTTTCCGGTAAGTGTCTTGACGAAGATTTGCAT 1211366 Score = 122 bits (134), Expect = 2e-22 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || | |||| ||| |||||||||||| || |||||| Sbjct 1211364 CCACCACGAAGGCGGAGCACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTC 1211305 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | |||||| || |||||||||| ||| |||||| || Sbjct 1211304 AGGGTGCGACCATCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGA 1211245 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || | || || || || || | ||| ||| || || Sbjct 1211244 ATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCGACC 1211185 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 || || ||||| ||||| || || ||||||||||||| Sbjct 1211184 TCAAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACGA 1211148 Score = 105 bits (116), Expect = 2e-17 Identities = 141/192 (73%), Gaps = 8/192 (4%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || |||||||| | || || ||||| || || |||||| | || || || ||| Sbjct 1211069 AGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTCAAGGTACGGCCATCT 1211010 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378 || | |||||| ||||||||||||| |||||||| || ||| ||||| || ||| Sbjct 1211009 TCAAGTTGTTTGCCTGCGAAGATCAAGCGCTGTTG---GTCCGGGGGAATTCCCTCCTTA 1210953 Query 288379 TCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGAT 288437 ||||| || || ||| || ||||| || || | |||||| || || || ||||| ||||| Sbjct 1210952 TCCTGAATCTT-GCTCTTTACGTTGTCGATGGTATCGCTGGACTCGACCTCGAGGGTGAT 1210894 Query 288438 CGTCTTCCCGGT 288449 ||||| ||||| Sbjct 1210893 GGTCTTGCCGGT 1210882 Score = 104 bits (114), Expect = 6e-17 Identities = 133/182 (73%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 ||||| || || ||||| | || || |||||||| || | ||| ||||| ||||||||| Sbjct 15702 TTTTGAATGTTGTAGTCTGAAAGGGTTCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATC 15643 Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 | ||| ||||| || ||| ||||| || || |||||||| || | || || || Sbjct 15642 AAACGTTGTTGG---TCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTG 15586 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| ||| || || || || || ||||| ||||| || || || ||||||||| Sbjct 15585 TCAATAGTATCAGAGGACTCGACCTCAAGGGTGATGGTCTTTCCCGTAAGGGTCTTGACG 15526 Query 288463 AA 288464 || Sbjct 15525 AA 15524 Score = 95.1 bits (104), Expect = 3e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || || || || || | ||| || | || | ||||| || || || || || || || Sbjct 1211823 TGACCGCCACGAAGACGAAGCACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCA 1211764 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | || || | || || || || || ||||| || ||||||| |||||||| | Sbjct 1211763 GAAAGAGTTCTGCCATCCTCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGT 1211704 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || || || || || || | || || || || || | ||| |||||| Sbjct 1211703 GGGATACCCTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCC 1211644 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | || || ||||| || |||| |||||||||||| |||||||| Sbjct 1211643 ACTTCCAATGTAATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 1211594 >seq182 Length=792865 Score = 87.8 bits (96), Expect = 4e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 269112 CGAAAAAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCT 269171 |||| |||| ||| | || ||| | || ||| | | | || ||||| || | | Sbjct 654983 CGAACAAGAATTCTTGACCGAGGCTCTTCCTTGTGCACTTCTTGGCATGAACGCGAACTT 655042 Query 269172 CATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTC--GGTTATGAG 269229 ||||| ||||| ||||| ||||| || |||||| |||| | | ||| ||| | ||| Sbjct 655043 GATGAAGCAATACATCGAGTTCGTTGCCGATCGT--CTTCTAGTCGCTCTTGGTAACGAG 655100 Query 269230 AAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAG 269289 || |||||||| || || || |||| ||| ||||| || || || | ||| ||| Sbjct 655101 AAGGTGTACAAGTCTGCCAACCCATTCGACTTCATGGAGAACATCTCCCTAGCAGGCAAG 655160 Query 269290 ACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCAACGTCCTGGTGTAATG 269340 || ||||||||||| ||| | || | ||||| || ||||||| ||| Sbjct 655161 ACAAACTTCTTCGAGAAGAGAGTTGGTGACTACCAGAAGGCTGGTGTTATG 655211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179650515619246