Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12-
14] 257 sequences; 43,359,131 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq247 107 2e-18
seq112 107 2e-18
seq89 86.0 6e-12
>seq247
Length=916335
Score = 107 bits (118), Expect = 2e-18
Identities = 135/183 (74%), Gaps = 2/183 (1%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|| || ||||| |||||||||||||||| || || || |||||||||||||| |
Sbjct 302858 GATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCGAGTTGTTTACCAGCG 302917
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539
|||| | ||| ||||| |||||||| ||||| || ||||| ||| || || | |
Sbjct 302918 AAGATCAAACGTTGTTGATCCGGAGGAATACCCTCCTTGTCCTGGATCTTGGACTTGACA 302977
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
||| || | |||||||| |||||| ||||| | || | || || ||||| ||||| ||
Sbjct 302978 TTG-TCGATGGTGTCGGACGACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGAGTCTT 303036
Query 138600 TAC 138602
||
Sbjct 303037 GAC 303039
Score = 93.3 bits (102), Expect = 4e-14
Identities = 133/185 (72%), Gaps = 2/185 (1%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
||||| || | ||| | || | ||| | | |||||||||||||||||||||||||||
Sbjct 303105 CCGCCACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTC 303164
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||||| || || |||||||| || | |||| | |||||||||||||| ||
Sbjct 303165 AAGGTACGGCCATCTTCAAGTTGTTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGA 303224
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGT-TTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| || || || || ||| | || | |||| | || | ||| ||| | ||||| ||
Sbjct 303225 ATTCCCTCCTTATC-CTGAATCTTGCTCTTTACGTTGTCGATGGTATCGCTGGACTCGAC 303283
Query 138567 CTCGA 138571
|||||
Sbjct 303284 CTCGA 303288
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||| | || ||||| | | ||||| || || |||||||||||
Sbjct 302597 CCACCACGGAGACGAAGGACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGAT 302656
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| || ||||| ||||| ||||| | | |||| ||||| || |||||||| ||
Sbjct 302657 AGAGTGCGGCCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGG 302716
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
||||| || || || ||| ||| ||| | | || | ||| || | |||||| |||
Sbjct 302717 ATACCCTCCTTATCTTGGATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCAACC 302776
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | || | || || || || || || || || || || |||||
Sbjct 302777 TCCAATGTGATTGTCTTTCCGGTAAGTGTCTTGACGAAGATTTGCAT 302823
Score = 82.4 bits (90), Expect = 8e-11
Identities = 139/195 (71%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAAT 138481
|||||| ||||||||||| || | ||| | || | ||||| | || || || | |
Sbjct 302404 CTCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCA-TCCTCCAACTGCTTTCCAGCAA 302462
Query 138482 AGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTAA 138539
|||| | |||||||||||||| || ||||| || ||||| ||| | |||| || |
Sbjct 302463 AGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTC-TTGAATCTTTGACTTGACA 302521
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
||| || | ||| || | ||| ||||| || | || | || || ||||||| ||| ||
Sbjct 302522 TTG-TCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTCTTTCCAGTCAAAGTCTT 302580
Query 138600 TACAAAAATCTGCAT 138614
|| || ||||||||
Sbjct 302581 GACGAAGATCTGCAT 302595
>seq112
Length=1448063
Score = 107 bits (118), Expect = 2e-18
Identities = 135/183 (74%), Gaps = 2/183 (1%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|| || ||||| |||||||||||||||| || || || |||||||||||||| |
Sbjct 1211331 GATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCATCTTCGAGTTGTTTACCAGCG 1211272
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539
|||| | ||| ||||| |||||||| ||||| || ||||| ||| || || | |
Sbjct 1211271 AAGATCAAACGTTGTTGATCCGGAGGAATACCCTCCTTGTCCTGGATCTTGGACTTGACA 1211212
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
||| || | |||||||| |||||| ||||| | || | || || ||||| ||||| ||
Sbjct 1211211 TTG-TCGATGGTGTCGGACGACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGAGTCTT 1211153
Query 138600 TAC 138602
||
Sbjct 1211152 GAC 1211150
Score = 93.3 bits (102), Expect = 4e-14
Identities = 133/185 (72%), Gaps = 2/185 (1%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
||||| || | ||| | || | ||| | | |||||||||||||||||||||||||||
Sbjct 1211084 CCGCCACGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTC 1211025
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||||| || || |||||||| || | |||| | |||||||||||||| ||
Sbjct 1211024 AAGGTACGGCCATCTTCAAGTTGTTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGA 1210965
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGT-TTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| || || || || ||| | || | |||| | || | ||| ||| | ||||| ||
Sbjct 1210964 ATTCCCTCCTTATC-CTGAATCTTGCTCTTTACGTTGTCGATGGTATCGCTGGACTCGAC 1210906
Query 138567 CTCGA 138571
|||||
Sbjct 1210905 CTCGA 1210901
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||| | || ||||| | | ||||| || || |||||||||||
Sbjct 1211592 CCACCACGGAGACGAAGGACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGAT 1211533
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| || ||||| ||||| ||||| | | |||| ||||| || |||||||| ||
Sbjct 1211532 AGAGTGCGGCCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGG 1211473
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
||||| || || || ||| ||| ||| | | || | ||| || | |||||| |||
Sbjct 1211472 ATACCCTCCTTATCTTGGATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCAACC 1211413
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | || | || || || || || || || || || || |||||
Sbjct 1211412 TCCAATGTGATTGTCTTTCCGGTAAGTGTCTTGACGAAGATTTGCAT 1211366
Score = 82.4 bits (90), Expect = 8e-11
Identities = 139/195 (71%), Gaps = 6/195 (3%)
Strand=Plus/Minus
Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAAT 138481
|||||| ||||||||||| || | ||| | || | ||||| | || || || | |
Sbjct 1211785 CTCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCA-TCCTCCAACTGCTTTCCAGCAA 1211727
Query 138482 AGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTAA 138539
|||| | |||||||||||||| || ||||| || ||||| ||| | |||| || |
Sbjct 1211726 AGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTC-TTGAATCTTTGACTTGACA 1211668
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
||| || | ||| || | ||| ||||| || | || | || || ||||||| ||| ||
Sbjct 1211667 TTG-TCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTCTTTCCAGTCAAAGTCTT 1211609
Query 138600 TACAAAAATCTGCAT 138614
|| || ||||||||
Sbjct 1211608 GACGAAGATCTGCAT 1211594
>seq89
Length=741344
Score = 86.0 bits (94), Expect = 6e-12
Identities = 140/199 (70%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|| |||||||| |||||||||||| | || || || |||||||| || ||||
Sbjct 321551 GATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCTTCGAGTTGCTTGCCGGCG 321610
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539
|||| ||||| || || || || || || || || ||||| ||| || || | |
Sbjct 321611 AAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACA 321670
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
||| || | ||| || | || || ||||||| || | |||||||| || || |||||
Sbjct 321671 TTG-TCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTT 321729
Query 138600 TACAAAAATCTGCATGGCT 138618
|| || ||||||||| ||
Sbjct 321730 GACGAAGATCTGCATGACT 321748
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496260805757040
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