Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12- 14] 257 sequences; 43,359,131 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq247 104 2e-17 seq112 104 2e-17 seq89 89.7 4e-13 >seq247 Length=916335 Score = 104 bits (114), Expect = 2e-17 Identities = 131/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| || ||||| || ||||| |||||||| ||||| | | | | ||||| | ||| Sbjct 303128 ATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTCAAGGTACGGCCATCTTCAAGTTG 303187 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 |||||| ||| | ||||| ||||||||||| |||||||| ||||| || ||| || Sbjct 303188 TTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATCCTGAATCTT 303247 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 ||| ||||| | || || |||||||| || || || | ||| ||||| || || || Sbjct 303248 GCTCTTTACGTTGTCGATGGTATCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 303307 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 14986 TCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTAT 15045 || || || ||||||||||| ||| |||| | || || || || || ||||| | Sbjct 302405 TCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCATCCTCCAACTGCTTTCCAGCAAAG 302464 Query 15046 ATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATT 15105 ||||| ||||||||||| ||| || || |||||||| ||| || || ||| | Sbjct 302465 ATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTGAATCTTTGACTTGACATTG 302524 Query 15106 TCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15165 || || ||||| ||| || || || |||||||| || || |||| ||| || || Sbjct 302525 TCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTCTTTCCAGTCAAAGTCTTGACG 302584 Query 15166 AAAATTTGCATA 15177 || || |||||| Sbjct 302585 AAGATCTGCATA 302596 >seq112 Length=1448063 Score = 104 bits (114), Expect = 2e-17 Identities = 131/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| || ||||| || ||||| |||||||| ||||| | | | | ||||| | ||| Sbjct 1211061 ATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTCAAGGTACGGCCATCTTCAAGTTG 1211002 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 |||||| ||| | ||||| ||||||||||| |||||||| ||||| || ||| || Sbjct 1211001 TTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATCCTGAATCTT 1210942 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 ||| ||||| | || || |||||||| || || || | ||| ||||| || || || Sbjct 1210941 GCTCTTTACGTTGTCGATGGTATCGCTGGACTCGACCTCGAGGGTGATGGTCTTGCCGGT 1210882 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 14986 TCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTAT 15045 || || || ||||||||||| ||| |||| | || || || || || ||||| | Sbjct 1211784 TCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCATCCTCCAACTGCTTTCCAGCAAAG 1211725 Query 15046 ATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATT 15105 ||||| ||||||||||| ||| || || |||||||| ||| || || ||| | Sbjct 1211724 ATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTGAATCTTTGACTTGACATTG 1211665 Query 15106 TCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15165 || || ||||| ||| || || || |||||||| || || |||| ||| || || Sbjct 1211664 TCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTCTTTCCAGTCAAAGTCTTGACG 1211605 Query 15166 AAAATTTGCATA 15177 || || |||||| Sbjct 1211604 AAGATCTGCATA 1211593 >seq89 Length=741344 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||| || || || ||||| |||||||| ||| || | | | ||||| Sbjct 321536 ACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCTTCG 321595 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||| ||||| ||| | |||| ||| || || || ||| ||||| |||||||| Sbjct 321596 AGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCCTGG 321655 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| || ||| | || || ||||| ||| || || | ||| ||||||||| Sbjct 321656 ATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTTTTA 321715 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| || || || ||||| Sbjct 321716 CCCGTGAGGGTTTTGACGAAGATCTGCAT 321744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357390880581245