Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12-
14] 257 sequences; 43,359,131 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq236 113 6e-20
seq182 105 8e-18
>seq236
Length=650478
Score = 113 bits (124), Expect = 6e-20
Identities = 863/1380 (63%), Gaps = 34/1380 (2%)
Strand=Plus/Plus
Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585
|||||||||| ||| | |||| | | |||||||||||||| || |||||||| |
Sbjct 518184 TGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGAC 518243
Query 115586 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 115645
|| ||||| | | |||||| || | | |||| | ||| || || ||||
Sbjct 518244 CCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATGT 518303
Query 115646 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 115705
| |||||| ||| || || || | ||| || ||||| || ||||| | || ||
Sbjct 518304 GAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCATTTGAA-CA 518362
Query 115706 CATCCTTCATCTTGA--TTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGAT 115763
|| ||| | || | ||||| || || |||| || ||| || ||| |||| ||
Sbjct 518363 -ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAAT 518421
Query 115764 ATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGAGATCCTTCATATCCTTTGA 115823
| || ||||| ||||| ||||| | || || | | |||||| | | |||
Sbjct 518422 GTTGGGAATGTTTTGAATAGAACCACCATCAGCGATGATACGGTTCTTCATGTTGTCTGA 518481
Query 115824 CCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCACC 115883
||| | || || | ||||||| | || || ||||| || || ||
Sbjct 518482 CCATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCC 518541
Query 115884 CGCGAGGGTGCGTCTCAGA-TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTAC 115942
|| | | || | ||| |||||||| | |||||||| ||||||||||| ||| ||
Sbjct 518542 AGCCAAGACACGACG-AGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAAC 518600
Query 115943 CCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGAC 116002
| | ||||| | ||| |||||| ||||| || || | ||| | |||||||||| ||
Sbjct 518601 CGAGAATTTGAGAGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACAC 518660
Query 116003 CCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTA---GTTG--AGCTTTGTCTC 116057
| | ||| || ||| | | |||||||| | || | || | | |||
Sbjct 518661 CGTGTTGTTTGATGGATTTCTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTAACTC 518720
Query 116058 CCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTC 116117
||| ||||||| | || || || | || | || || || || | |||||
Sbjct 518721 CCC-----ACATATCGTATTGAAGTTCGCCCTTCGAGACAGGTGAGCCTTCGTAGGTCTC 518775
Query 116118 ATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGT 116177
||| | ||| ||| || | || | || | || ||||| || || ||
Sbjct 518776 ATAGGTACCCAACTCCTTAGCAATCTCAACGGACGATGTCAAAGCAGCGTGGTAAATAGT 518835
Query 116178 CTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACG--GCAC 116235
|| || || || || | |||||| || || ||||| | | || | |
Sbjct 518836 TTCGAAGATTTGAATGTTGAGGTGCTTGGCTTCAGGTGATTCAAATGGTAATCGAAGAGC 518895
Query 116236 AAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTA 116295
||| || |||| || |||||||| ||||||| | || || ||||| | | |||
Sbjct 518896 CAAAAAAG--CATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATTG 518953
Query 116296 GACTTTCGAGCGGTCTCC-ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTT 116354
||||| || ||| ||||| || | || | || || | | | || | ||| |
Sbjct 518954 CTCTTTCTGGCC-TCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCT 519012
Query 116355 GGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTC-TTCAT 116413
| || || | || | || |||||||||| | |||| || | | ||| |||||
Sbjct 519013 GACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCC---CTCATTCAT 519069
Query 116414 TG--ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATC 116471
||| | | || || || || || |||| ||||| || | ||||| |
Sbjct 519070 GTCCACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGC 519129
Query 116472 AGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTG 116531
|| ||| || | |||||| || |||||||| || || ||||||||| | |||||||||
Sbjct 519130 AGAGTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTG 519189
Query 116532 ATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTG 116591
|| ||| |||| || ||||||||||| ||||| |||| | || ||||| |||||
Sbjct 519190 GTTGCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTG 519249
Query 116592 GGACTTGAGAATAGCCTTCCATACATCGGCGGCTGGCACAGTGGCGTTG---GCTCGCCC 116648
| || |||||| | | ||| | | |||| | ||| ||| ||| ||
Sbjct 519250 AGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGA---TGGTCTTGCGACCTCTACC 519306
Query 116649 CTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCC 116708
|||| ||| || | ||||| || |||||||| || || | || | | |||
Sbjct 519307 TTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAACCC 519366
Query 116709 TGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAA 116768
|| | || || || | || | ||| | | || ||||| |||||||||||
Sbjct 519367 AGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAA 519426
Query 116769 GAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTG 116828
||| || || ||||| | || |||| ||||| || ||| ||||||| | || ||
Sbjct 519427 GAGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCGTG 519486
Query 116829 ATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGC 116888
|| || | |||| || || | | ||| |||||||| || || || || || ||
Sbjct 519487 GTTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGC 519546
>seq182
Length=792865
Score = 105 bits (116), Expect = 8e-18
Identities = 112/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591
|||||||| || |||||||||||||| ||||| ||||| ||||| | ||| | ||
Sbjct 654892 TGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGAAAGTGAGACCAGCCATCAAGCCA 654833
Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 127651
|||||||| | |||||| || | | ||||| ||| ||||||||| ||||| |||
Sbjct 654832 CGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCACTGAAGAAGATGCCCTCAACAGCA 654773
Query 127652 GCGAACGCAAATAGACGCTCGGCAAAGG 127679
|| || |||| ||||||| |||||||
Sbjct 654772 GCAAAAGCAACCAGACGCTGAGCAAAGG 654745
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613505229108120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |