Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12- 14] 257 sequences; 43,359,131 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq236 113 6e-20 seq182 105 8e-18 >seq236 Length=650478 Score = 113 bits (124), Expect = 6e-20 Identities = 863/1380 (63%), Gaps = 34/1380 (2%) Strand=Plus/Plus Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585 |||||||||| ||| | |||| | | |||||||||||||| || |||||||| | Sbjct 518184 TGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGAC 518243 Query 115586 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 115645 || ||||| | | |||||| || | | |||| | ||| || || |||| Sbjct 518244 CCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATGT 518303 Query 115646 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 115705 | |||||| ||| || || || | ||| || ||||| || ||||| | || || Sbjct 518304 GAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCATTTGAA-CA 518362 Query 115706 CATCCTTCATCTTGA--TTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGAT 115763 || ||| | || | ||||| || || |||| || ||| || ||| |||| || Sbjct 518363 -ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAAT 518421 Query 115764 ATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGAGATCCTTCATATCCTTTGA 115823 | || ||||| ||||| ||||| | || || | | |||||| | | ||| Sbjct 518422 GTTGGGAATGTTTTGAATAGAACCACCATCAGCGATGATACGGTTCTTCATGTTGTCTGA 518481 Query 115824 CCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCACC 115883 ||| | || || | ||||||| | || || ||||| || || || Sbjct 518482 CCATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCC 518541 Query 115884 CGCGAGGGTGCGTCTCAGA-TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTAC 115942 || | | || | ||| |||||||| | |||||||| ||||||||||| ||| || Sbjct 518542 AGCCAAGACACGACG-AGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAAC 518600 Query 115943 CCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGAC 116002 | | ||||| | ||| |||||| ||||| || || | ||| | |||||||||| || Sbjct 518601 CGAGAATTTGAGAGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACAC 518660 Query 116003 CCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTA---GTTG--AGCTTTGTCTC 116057 | | ||| || ||| | | |||||||| | || | || | | ||| Sbjct 518661 CGTGTTGTTTGATGGATTTCTTCAAGCTATCCCAGTCCCAAAGGTCGGTAGGTGTAACTC 518720 Query 116058 CCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTC 116117 ||| ||||||| | || || || | || | || || || || | ||||| Sbjct 518721 CCC-----ACATATCGTATTGAAGTTCGCCCTTCGAGACAGGTGAGCCTTCGTAGGTCTC 518775 Query 116118 ATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGT 116177 ||| | ||| ||| || | || | || | || ||||| || || || Sbjct 518776 ATAGGTACCCAACTCCTTAGCAATCTCAACGGACGATGTCAAAGCAGCGTGGTAAATAGT 518835 Query 116178 CTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACG--GCAC 116235 || || || || || | |||||| || || ||||| | | || | | Sbjct 518836 TTCGAAGATTTGAATGTTGAGGTGCTTGGCTTCAGGTGATTCAAATGGTAATCGAAGAGC 518895 Query 116236 AAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTA 116295 ||| || |||| || |||||||| ||||||| | || || ||||| | | ||| Sbjct 518896 CAAAAAAG--CATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATTG 518953 Query 116296 GACTTTCGAGCGGTCTCC-ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTT 116354 ||||| || ||| ||||| || | || | || || | | | || | ||| | Sbjct 518954 CTCTTTCTGGCC-TCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCT 519012 Query 116355 GGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTC-TTCAT 116413 | || || | || | || |||||||||| | |||| || | | ||| ||||| Sbjct 519013 GACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCC---CTCATTCAT 519069 Query 116414 TG--ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATC 116471 ||| | | || || || || || |||| ||||| || | ||||| | Sbjct 519070 GTCCACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGC 519129 Query 116472 AGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTG 116531 || ||| || | |||||| || |||||||| || || ||||||||| | ||||||||| Sbjct 519130 AGAGTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTG 519189 Query 116532 ATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTG 116591 || ||| |||| || ||||||||||| ||||| |||| | || ||||| ||||| Sbjct 519190 GTTGCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTG 519249 Query 116592 GGACTTGAGAATAGCCTTCCATACATCGGCGGCTGGCACAGTGGCGTTG---GCTCGCCC 116648 | || |||||| | | ||| | | |||| | ||| ||| ||| || Sbjct 519250 AGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGA---TGGTCTTGCGACCTCTACC 519306 Query 116649 CTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCC 116708 |||| ||| || | ||||| || |||||||| || || | || | | ||| Sbjct 519307 TTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAACCC 519366 Query 116709 TGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAA 116768 || | || || || | || | ||| | | || ||||| ||||||||||| Sbjct 519367 AGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCATGAA 519426 Query 116769 GAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTG 116828 ||| || || ||||| | || |||| ||||| || ||| ||||||| | || || Sbjct 519427 GAGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCGTG 519486 Query 116829 ATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGC 116888 || || | |||| || || | | ||| |||||||| || || || || || || Sbjct 519487 GTTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGC 519546 >seq182 Length=792865 Score = 105 bits (116), Expect = 8e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591 |||||||| || |||||||||||||| ||||| ||||| ||||| | ||| | || Sbjct 654892 TGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGAAAGTGAGACCAGCCATCAAGCCA 654833 Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 127651 |||||||| | |||||| || | | ||||| ||| ||||||||| ||||| ||| Sbjct 654832 CGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCACTGAAGAAGATGCCCTCAACAGCA 654773 Query 127652 GCGAACGCAAATAGACGCTCGGCAAAGG 127679 || || |||| ||||||| ||||||| Sbjct 654772 GCAAAAGCAACCAGACGCTGAGCAAAGG 654745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613505229108120