Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12- 14] 257 sequences; 43,359,131 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq89 125 2e-23 seq247 116 9e-21 seq112 116 9e-21 seq236 84.2 5e-11 >seq89 Length=741344 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| ||||| || |||||||||| ||||||||| | | || | ||||||| Sbjct 321533 AGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCT 321592 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| ||||||||||| ||||| ||||| || || ||||| || ||| Sbjct 321593 TCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCC 321652 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| ||| || | | ||| || || | ||||| || Sbjct 321653 TGGATCTTGGACTTGACATTGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTT 321712 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| ||||| || || || || Sbjct 321713 TTACCCGTGAGGGTTTTGACGAAGATCTG 321741 >seq247 Length=916335 Score = 116 bits (128), Expect = 9e-21 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| || |||||||| ||||||||||| | ||||||||| ||| || Sbjct 303111 CGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTCAAGGTA 303170 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| || || || || |||||||| | ||||| |||||||| |||||| Sbjct 303171 CGGCCATCTTCAAGTTGTTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCC 303230 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||| ||| |||| ||| || | | || || || | Sbjct 303231 TCCTTATCCTGAATCTTGCTCTTTACGTTGTCGATGGTATCGCTGGACTCGACCTCGAGG 303290 Query 199589 GTGATCGTCTTACCCGTGA 199607 ||||| ||||| || |||| Sbjct 303291 GTGATGGTCTTGCCGGTGA 303309 Score = 107 bits (118), Expect = 5e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | || || || ||||| || |||| ||||||||| | | ||| | ||||| Sbjct 302612 AGGACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCC 302671 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| || || ||||| ||||| ||||||||||| || || || || Sbjct 302672 TCAAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCT 302731 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || |||||| |||||| |||| ||| |||| | || || ||||| ||||| ||| Sbjct 302732 TGGATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAATGTGATTGTC 302791 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || || || ||||| Sbjct 302792 TTTCCGGTAAGTGTCTTGACGAAGATTTG 302820 >seq112 Length=1448063 Score = 116 bits (128), Expect = 9e-21 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| || |||||||| ||||||||||| | ||||||||| ||| || Sbjct 1211078 CGAAGACGGAGGACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTCAAGGTA 1211019 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| || || || || |||||||| | ||||| |||||||| |||||| Sbjct 1211018 CGGCCATCTTCAAGTTGTTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCC 1210959 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||| ||| |||| ||| || | | || || || | Sbjct 1210958 TCCTTATCCTGAATCTTGCTCTTTACGTTGTCGATGGTATCGCTGGACTCGACCTCGAGG 1210899 Query 199589 GTGATCGTCTTACCCGTGA 199607 ||||| ||||| || |||| Sbjct 1210898 GTGATGGTCTTGCCGGTGA 1210880 Score = 107 bits (118), Expect = 5e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | || || || ||||| || |||| ||||||||| | | ||| | ||||| Sbjct 1211577 AGGACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCC 1211518 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| || || ||||| ||||| ||||||||||| || || || || Sbjct 1211517 TCAAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCT 1211458 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || |||||| |||||| |||| ||| |||| | || || ||||| ||||| ||| Sbjct 1211457 TGGATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAATGTGATTGTC 1211398 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || || || ||||| Sbjct 1211397 TTTCCGGTAAGTGTCTTGACGAAGATTTG 1211369 >seq236 Length=650478 Score = 84.2 bits (92), Expect = 5e-11 Identities = 185/276 (67%), Gaps = 6/276 (2%) Strand=Plus/Plus Query 167740 GTGCTTTTGGTTA---TTTTTGCGGCATATGGCGTCCTTGTAGACGATGAAGGGCATACC 167796 || ||||||||| || ||| |||| || |||||||| | ||||| || | || Sbjct 519181 GTTCTTTTGGTTGCTCTTCTTGTTGCAT---GCATCCTTGTAAAGCATGAATGGATTTCC 519237 Query 167797 AACCTCCGCTTGAGCCACCAAAATGTGGTGCCAAAGTTCTTGGGCTTTTACGGTAGTTCT 167856 ||| | ||||||| | | |||| || |||||| | ||||||||| | ||| | | Sbjct 519238 GGTCTCAGTTTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCG 519297 Query 167857 CGCTCTTCCTTCTTTTTCGTATCTCTCATAGAGGTCTTCGAAATCCTTCCCGTAAATTTC 167916 |||| ||||| || || || ||||||||||| |||| || || | || || | || Sbjct 519298 ACCTCTACCTTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATC 519357 Query 167917 GTCAAGACCGGGAGCTTCCTTCGGACAAAAGAGACTCCAATTTCCATCGGTCTCGACCCT 167976 | | || ||| ||| || || || | || |||||| | | | || || | Sbjct 519358 AGCCAACCCAGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACG 519417 Query 167977 CTTCATGAAGAGGTCGGAAGTCCAAATCGCGTAGAA 168012 |||||||||||| || | | |||| | || ||||| Sbjct 519418 CTTCATGAAGAGATCCGGAATCCACAAGGCATAGAA 519453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178917718032219