Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12-
14] 257 sequences; 43,359,131 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq89 123 3e-23
seq247 87.8 2e-12
seq112 87.8 2e-12
>seq89
Length=741344
Score = 123 bits (136), Expect = 3e-23
Identities = 142/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||||||||| ||||||||||| || ||||| | || ||||| ||||||||||||||
Sbjct 321554 TCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCTTCGAGTTGCTTGCCGGCGAAG 321613
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
|||| || ||||| || | || | | |||||||||| |||||| ||||| |
Sbjct 321614 ATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTG 321673
Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582
| | || || ||||| || || | ||||||||||| ||||| || ||||| ||
Sbjct 321674 TCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTGACG 321733
Query 46583 AAGATTTGCAT 46593
||||| |||||
Sbjct 321734 AAGATCTGCAT 321744
>seq247
Length=916335
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|||| ||||| ||| ||| || ||||| |||||||| ||||||||||| | || ||
Sbjct 302615 ACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCCTCA 302674
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
|| ||||| || || || || | || |||||||| | || | | |||||| || |
Sbjct 302675 AGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCTTGG 302734
Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563
||||| | || ||| | | | || || ||| || || |||| ||||| || ||
Sbjct 302735 ATCTT-TGATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAATGTGATTGTCTT 302793
Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| || || || || || |||||||||||
Sbjct 302794 TCCGGTAAGTGTCTTGACGAAGATTTGCAT 302823
Score = 86.0 bits (94), Expect = 7e-12
Identities = 132/186 (71%), Gaps = 2/186 (1%)
Strand=Plus/Plus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|| ||||| | ||| ||||||||| || ||||||||| | || || | || ||
Sbjct 303123 ACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTCAAGGTACGGCCATCTTCA 303182
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
|| || ||||| ||||| ||||||||||| ||||| | || | | |||||| |||
Sbjct 303183 AGTTGTTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATCCTGA 303242
Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563
||||| |||| | ||| | | | || ||||| || || || || | |||||||| ||
Sbjct 303243 ATCTTGCTCTTTA-CGTTGTCGATGGTATCGCTGGACTCGACCTCGAGGGTGATGGTCTT 303301
Query 46564 GCCCGT 46569
||| ||
Sbjct 303302 GCCGGT 303307
>seq112
Length=1448063
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|||| ||||| ||| ||| || ||||| |||||||| ||||||||||| | || ||
Sbjct 1211574 ACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCCTCA 1211515
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
|| ||||| || || || || | || |||||||| | || | | |||||| || |
Sbjct 1211514 AGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCTTGG 1211455
Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563
||||| | || ||| | | | || || ||| || || |||| ||||| || ||
Sbjct 1211454 ATCTT-TGATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAATGTGATTGTCTT 1211396
Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| || || || || || |||||||||||
Sbjct 1211395 TCCGGTAAGTGTCTTGACGAAGATTTGCAT 1211366
Score = 86.0 bits (94), Expect = 7e-12
Identities = 132/186 (71%), Gaps = 2/186 (1%)
Strand=Plus/Minus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|| ||||| | ||| ||||||||| || ||||||||| | || || | || ||
Sbjct 1211066 ACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTCAAGGTACGGCCATCTTCA 1211007
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
|| || ||||| ||||| ||||||||||| ||||| | || | | |||||| |||
Sbjct 1211006 AGTTGTTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATCCTGA 1210947
Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563
||||| |||| | ||| | | | || ||||| || || || || | |||||||| ||
Sbjct 1210946 ATCTTGCTCTTTA-CGTTGTCGATGGTATCGCTGGACTCGACCTCGAGGGTGATGGTCTT 1210888
Query 46564 GCCCGT 46569
||| ||
Sbjct 1210887 GCCGGT 1210882
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565236584171640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |