Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12-
14] 257 sequences; 43,359,131 total letters
Query= NC_013797.1
Length=108592
Score E
Sequences producing significant alignments: (Bits) Value
seq247 91.5 1e-13
seq112 91.5 1e-13
>seq247
Length=916335
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/231 (69%), Gaps = 8/231 (3%)
Strand=Plus/Plus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
||||| || | ||| || ||||| ||||||||||| || || || || || |||| |
Sbjct 302369 CCGCCACGAAGACGAAGCACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAAT----C 302424
Query 39553 AAAACGCGTT----CATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGA 39608
| || | ||| |||| ||||| || || || |||| || || ||||| || ||||
Sbjct 302425 AGAAAGAGTTCTGCCATCCTCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGG 302484
Query 39609 GGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTC 39668
|| | || || ||||| || ||| || | | | | || |||| |||
Sbjct 302485 TGGGATACCCTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATGGTATCTGACGATTC 302544
Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
||| ||||| ||||| || || || || ||||| || ||||||||||||||
Sbjct 302545 CACTTCCAATGTAATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 302595
>seq112
Length=1448063
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/231 (69%), Gaps = 8/231 (3%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
||||| || | ||| || ||||| ||||||||||| || || || || || |||| |
Sbjct 1211820 CCGCCACGAAGACGAAGCACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAAT----C 1211765
Query 39553 AAAACGCGTT----CATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGA 39608
| || | ||| |||| ||||| || || || |||| || || ||||| || ||||
Sbjct 1211764 AGAAAGAGTTCTGCCATCCTCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGG 1211705
Query 39609 GGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTC 39668
|| | || || ||||| || ||| || | | | | || |||| |||
Sbjct 1211704 TGGGATACCCTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATGGTATCTGACGATTC 1211645
Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
||| ||||| ||||| || || || || ||||| || ||||||||||||||
Sbjct 1211644 CACTTCCAATGTAATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 1211594
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 347368511973281
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |