Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12- 14] 257 sequences; 43,359,131 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq182 140 3e-28 seq89 123 2e-23 seq247 120 3e-22 seq112 120 3e-22 >seq182 Length=792865 Score = 140 bits (154), Expect = 3e-28 Identities = 197/276 (71%), Gaps = 3/276 (1%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| || ||||||||| || || |||| ||||| | ||||||||| ||||| || Sbjct 654584 GTATGTATCGATGAGGAGAGAGTATGTTTCGGAGTGGATGTTCTCCATCATAATTTGGAA 654525 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 ||||| ||||| || |||||| | || ||||| | ||| |||||||| || || Sbjct 654524 ACCGTAGAAGCAACGAGCCTCGGGGATTTGAACTTCACCACTGAAGCGCTCGACAAGGTT 654465 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 |||||||| || |||||| || ||||| || || || ||||| |||||||| ||| Sbjct 654464 CTCGTTGACTATTCCGTCGGATGCTGCGAAGAATGCGAGGACGTGAGAGATGAAATAGCG 654405 Query 133347 CTCGTTGTCGTTCAA---GCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||| | || || | | | ||| ||| | |||||| |||| ||| | ||| || Sbjct 654404 CTCATCATCATTGAGTTTGTTATTCCAATCGTGAAGGTCCTTTGACAAGTCGATCTCTTC 654345 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | ||||| || || |||||||| ||||||||||| Sbjct 654344 TGCTGTCCAGAAAGATGCCTCGGCCTTTTTGTACAT 654309 Score = 93.3 bits (102), Expect = 4e-14 Identities = 340/521 (65%), Gaps = 11/521 (2%) Strand=Plus/Minus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| || ||| || || || || || || | ||||| || || || || || || | Sbjct 655211 CATAACACCAGCCTTCTGGTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGC 655152 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTG--GTGCCG 132708 | ||| ||| | ||| || || || |||||||| | ||||| ||| || | Sbjct 655151 TAGGGAGATGTTCTCCATGAAGTCGAATGGGTTGGCAGACTTGTACACCTTCTCGTTACC 655092 Query 132709 ATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACAT-GGTTTCGCA 132767 | || |||| || || | ||||| |||||||||||||||||| ||| ||||| Sbjct 655091 AAGAG--CGACTAGAAGACGATCGGCAACGAACTCGATGTATTGCTTCATCAAGTTCGC- 655035 Query 132768 ATTAAGTCCCAGCAGACGCAC-CGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGA 132826 || | || || || |||| || || || ||||| | || ||| ||||| | | Sbjct 655034 GTTCATGCCAAGAAG-TGCACAAGGAAGAGCCTCGGTCAAGAATTCTTGTTCGATCTCAA 654976 Query 132827 CCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGA 132886 | || || |||| || || || | | ||| || || ||| ||| || || Sbjct 654975 CAGCCTCTGTGATGACATCTTGGACAGCCTGCTTGCTTGGACGGTGCTTCAAGTGGGAGA 654916 Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 | | | ||| || |||||| ||| | || || || | ||| ||||| || ||| || Sbjct 654915 AGAGGAGGCACGCGAAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGA 654856 Query 132947 AAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCG 133006 |||| | || | ||| | ||| || || |||||||| || || | ||||| || Sbjct 654855 AAGTGAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCAC 654796 Query 133007 AAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTT 133066 ||||||| |||||| || || || ||||| ||||| |||| | || || | | || Sbjct 654795 TGAAGAAGATGCCCTCAACAGCAGCAAAAGCAACCAGACGCTGAGCAAAGGTAGAGTTTT 654736 Query 133067 TG-CTGGCGATCCAGCGCAGCGCCCATTCGGCCTT-TTCTT 133105 || || | ||||| | | ||||| ||||| || ||||| Sbjct 654735 TGTCTTG-AATCCATCTGACAGCCCAGTCGGCTTTCTTCTT 654696 >seq89 Length=741344 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| |||||||| |||||||||||| |||| || || || | Sbjct 321744 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 321685 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || || |||| ||||| |||||||| || | || || Sbjct 321684 GATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCAG 321625 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || || || | ||| ||||| || || || || | |||||||| |||||||||| Sbjct 321624 CAACGTCTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAAC 321565 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || || || ||||| || ||| Sbjct 321564 ATCCAAAAGGAATCCACTCTTCACTTGGTCCTTCGT 321529 >seq247 Length=916335 Score = 120 bits (132), Expect = 3e-22 Identities = 153/207 (74%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324 |||| ||||| ||||||||| |||| |||||| ||| ||| | | | | |||| |||| Sbjct 303309 TCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACCATCGACAACG--TAAA 303252 Query 38325 GAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 || || || | || || |||||||||||| | ||||||||||| | || | ||| || Sbjct 303251 GAGCAAGATTCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGG 303192 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443 |||||| || || || | || ||| | | |||||||||||| |||||||| | || || Sbjct 303191 CAAACAACTTGAAGATGGCCGTACCTTGAGCGACTACAACATTCAAAAGGAGTCTACTCT 303132 Query 38444 GCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| | || || ||| | | ||||| Sbjct 303131 CCATCTCGTCCTCCGTCTTCGTGGCGG 303105 Score = 113 bits (124), Expect = 5e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313 |||| || || ||||| ||||| |||||||| | || |||||| | |||||| | | Sbjct 303041 TCGTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCG 302982 Query 38314 AAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCA 38373 | | | || || |||| ||||| ||||| ||||| | || ||||| || | | Sbjct 302981 ACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAACAACGTTTGA 302922 Query 38374 TTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433 | | ||| || ||||| || || || | |||||||| | |||||||||||||||||| | Sbjct 302921 TCTTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAG 302862 Query 38434 AAGCGACGCTGCATTTGGTGCTGCG 38458 || | || || || |||||||| || Sbjct 302861 AATCCACCCTTCACTTGGTGCTCCG 302837 Score = 82.4 bits (90), Expect = 8e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || || || || ||||| | || || ||| | | Sbjct 302823 ATGCAAATCTTCGTCAAGACACTTACCGGAAAGACAATCACATTGGAGGTTGAGTCGTCA 302764 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | ||| ||| |||| || || ||||| || || | ||||| Sbjct 302763 GATACCATCGACAACG-TGAAATCAAAGATCCAAGATAAGGAGGGTATCCCACCGGACCA 302705 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || || || | || || || || || || || | ||||| || |||||||| Sbjct 302704 GCAACGTCTTATCTTTGCTGGTAAGCAACTTGAGGATGGCCGCACTCTATCAGACTACAA 302645 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| || || | || ||||||||||| || ||| Sbjct 302644 CATCCAGAAAGAGTCCACACTGCATTTGGTCCTTCGT 302608 >seq112 Length=1448063 Score = 120 bits (132), Expect = 3e-22 Identities = 153/207 (74%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324 |||| ||||| ||||||||| |||| |||||| ||| ||| | | | | |||| |||| Sbjct 1210880 TCACCGGCAAGACCATCACCCTCGAGGTCGAGTCCAGCGATACCATCGACAACG--TAAA 1210937 Query 38325 GAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 || || || | || || |||||||||||| | ||||||||||| | || | ||| || Sbjct 1210938 GAGCAAGATTCAGGATAAGGAGGGAATTCCCCCGGACCAACAGCGCTTGATCTTCGCAGG 1210997 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443 |||||| || || || | || ||| | | |||||||||||| |||||||| | || || Sbjct 1210998 CAAACAACTTGAAGATGGCCGTACCTTGAGCGACTACAACATTCAAAAGGAGTCTACTCT 1211057 Query 38444 GCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| | || || ||| | | ||||| Sbjct 1211058 CCATCTCGTCCTCCGTCTTCGTGGCGG 1211084 Score = 113 bits (124), Expect = 5e-20 Identities = 148/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313 |||| || || ||||| ||||| |||||||| | || |||||| | |||||| | | Sbjct 1211148 TCGTCAAGACTCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCGTCCGACACCATCG 1211207 Query 38314 AAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCA 38373 | | | || || |||| ||||| ||||| ||||| | || ||||| || | | Sbjct 1211208 ACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGATCAACAACGTTTGA 1211267 Query 38374 TTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433 | | ||| || ||||| || || || | |||||||| | |||||||||||||||||| | Sbjct 1211268 TCTTCGCTGGTAAACAACTCGAAGATGGTCGCACCCTGAGCGACTACAACATCCAAAAAG 1211327 Query 38434 AAGCGACGCTGCATTTGGTGCTGCG 38458 || | || || || |||||||| || Sbjct 1211328 AATCCACCCTTCACTTGGTGCTCCG 1211352 Score = 89.7 bits (98), Expect = 5e-13 Identities = 133/188 (71%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 38248 AAATA--TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGA 38305 ||||| ||||| || || || ||||| || ||||||||| | || |||||| || | || Sbjct 15517 AAATAGCTTCGTCAAGACCCTTACGGGAAAGACCATCACCCTTGAGGTCGAGTCCTCTGA 15576 Query 38306 CAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACA 38365 | | | | | || || |||| ||||| |||||||||||| | |||||||| Sbjct 15577 TACTATTGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAACA 15636 Query 38366 GCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACAT 38425 || | || | ||| || || || || || |||| || ||||| ||||||||||| Sbjct 15637 ACGTTTGATCTTCGCCGGAAAGCAACTCGAGGACGGACGAACCCTTTCAGACTACAACAT 15696 Query 38426 CCAAAAGG 38433 ||||||| Sbjct 15697 TCAAAAGG 15704 Score = 82.4 bits (90), Expect = 8e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || || || || ||||| | || || ||| | | Sbjct 1211366 ATGCAAATCTTCGTCAAGACACTTACCGGAAAGACAATCACATTGGAGGTTGAGTCGTCA 1211425 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | ||| ||| |||| || || ||||| || || | ||||| Sbjct 1211426 GATACCATCGACAACG-TGAAATCAAAGATCCAAGATAAGGAGGGTATCCCACCGGACCA 1211484 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || || || | || || || || || || || | ||||| || |||||||| Sbjct 1211485 GCAACGTCTTATCTTTGCTGGTAAGCAACTTGAGGATGGCCGCACTCTATCAGACTACAA 1211544 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| || || | || ||||||||||| || ||| Sbjct 1211545 CATCCAGAAAGAGTCCACACTGCATTTGGTCCTTCGT 1211581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500171193194880