Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12- 14] 257 sequences; 43,359,131 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq247 206 2e-47 seq112 206 2e-47 seq181 86.0 5e-11 >seq247 Length=916335 Score = 206 bits (228), Expect = 2e-47 Identities = 896/1401 (64%), Gaps = 17/1401 (1%) Strand=Plus/Minus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 |||| ||||| | ||||| |||||||| | ||| || ||||| || ||||| || || Sbjct 267663 GCAGAGACATTCATGATACCGTTGGCATCAATATCGAAGGTGACCTCGATTTGTGGAACA 267604 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 || | |||||||||| || || | | || |||| ||| || || || || Sbjct 267603 CCACGAGGAGCAGGTGGAATACCAGTGAGTTCGAACTTTCCGAGAAGGTTGTTGTCCTTT 267544 Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 517438 ||| ||| ||||||||||| | ||| || || ||| ||| ||||| || | Sbjct 267543 GTGCGCGTTCTCTCACCCTCGAAGACTTGAATCAAGACACCAGGTTGGTTATCGGAGAAG 267484 Query 517439 GTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTC 517498 || | || ||| || || || ||||| || ||||| | | ||| | |||||| Sbjct 267483 GTAGAGAAGACTTCAGACTTCTTGGTGGGAATGGTGGTGTTGCGGTGAATGAGCTTGGTC 267424 Query 517499 ATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATA 517558 || ||||| || || || | ||||||||| | || | |||||| | || | || Sbjct 267423 ATTTGTCCACCAGCAGTCTCGATACCAAGAGACAATGGCGCGACATCGAGAAGAAGGATC 267364 Query 517559 T--TTTGAAGTTTTTCATCA-GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 517615 | || | || || || | || | |||| || ||||| || || | ||||| || Sbjct 267363 TCGTTGGTAGACTTGGATGAAGTGTCACCAGAGAGGATAGCAGCCTGGACGGCAGCGCCG 267304 Query 517616 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 517675 ||||||||||| |||||||| || | | | ||| | | ||||| ||||| | | Sbjct 267303 TATGCAACAGCCTCATCAGGGTTGATGGACTTGTTTGGCTCCTTACCGTTGAAGTAGTCG 267244 Query 517676 GAAAGAAGTTGTCT---TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCA 517732 | | || | ||| ||| | || ||||| | || || || || || || || || Sbjct 267243 GTGATGAGCT-TCTGGATACGT--GGGATACGGGTGGAACCACCGACCAAGACGATCTCG 267187 Query 517733 TGCAC-CTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC-GGGTTCAAGAC 517790 || || ||| ||||| || | || | || | || || || ||||| | Sbjct 267186 TGGACTCTG-GATTTGTCGATCTTGGCGTCAGCGAGGACACGGTCGACTGGGTTGGTGGT 267128 Query 517791 CCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTAT 517850 | || || | |||| |||||||| ||||| ||| | ||| | || | | Sbjct 267127 G-GATCGGAAGAGGTCTTGGCAAAGTTCCTCGAAACGAGCACGAGTGATAGAGGTGTAGA 267069 Query 517851 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 517910 | || || || ||||| | ||| || | ||| || | || || | || || || || | Sbjct 267068 AGTCGATACCCTCGAAGAGAGAGTCGATTTCGATGGATGTCTGGGCAGAGGAGGAGAGGG 267009 Query 517911 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGC-TGATTGATTC 517969 ||| ||||||||||| ||||| || | || | || | || || | | || || Sbjct 267008 TACGCTTAGCACGTTCGCATGCAGTGCGGAGACGACGAAGAGCACGAGCGTTAGTGCTT- 266950 Query 517970 AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCA 518029 |||||| | || | || | |||||| || | || | | || ||||| || || Sbjct 266949 AAATCTTTCTTGTGCTTGCGCTTGAACTCGTTTACGAAGTGGTTAACGAGACGGTTGTCG 266890 Query 518030 AAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCT 518089 || || ||||| ||||| | ||| | || | || | | |||| || | || || Sbjct 266889 AAGTCCTCACCACCCAAGTGAGTGTCACCGGCGGTGGACTTGACTTCAAAGATACCCTCC 266830 Query 518090 TCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTC 518149 |||| | ||| |||| ||||| |||||| ||||| | ||| || || || || || Sbjct 266829 TCAATGGTCAAGAGAGAAACATCGAAGGTTCCTCCACCAAGATCGAAGATGAGAACGTTT 266770 Query 518150 ATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTA 518209 || || || || || | ||| || |||| ||||| ||||| || || || Sbjct 266769 CGCTCACCCTCAACCTTCTTGTCCAAACCGTAAGCAATGGCAGCTGCAGTAGGCTCGTTG 266710 Query 518210 ATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGT 518269 || || | | |||||| ||||| || || ||||||||||| |||||||| | ||| Sbjct 266709 ATGATACGGAGAACATTGAGACCGGCGATGAGACCTGCATCTTTTGTGGCTTGACGTTGG 266650 Query 518270 GAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAA 518329 || ||| | || ||||| |||||||| | || || | | || | ||| | || Sbjct 266649 GAGTCGGTGAAGTATGCTGGAACAGTGACGACAGCGTTGTTGACGGTTCCACCGAGGTAG 266590 Query 518330 GCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATAT 518389 || || || | |||| || || | ||| || || |||| ||| || | || Sbjct 266589 GCCTCAGCAGTCTCCCTCATCTTGACCAAGACCATCGAGGAGATTTCTTCGGGTGTGAAT 266530 Query 518390 TGCTTGGATTC-ATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAAC 518448 ||||| | || |||| | ||||||| ||| || ||| | || || Sbjct 266529 TGCTTAGCCTCGCCCTTGA-ACTCGACTTCAATGACTGGCTTTCCGCCACGGTCGATGAC 266471 Query 518449 TTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAAT 518508 || ||||| ||| |||||||| | ||| || | |||| || | | ||| || Sbjct 266470 CTTGAATGGGAAGTGCTTCATATCAGCTTGGACTTCTGGGTCGGCGAATTTACGACCGAT 266411 Query 518509 TAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGC 518568 | || || ||||| || | || || || || || || || |||| | || || || Sbjct 266410 CAGACGCTTAGCATCGAAGACTGTGTTTGTAGGGTTCATGGCGACTTGGTTCTTTGCGGC 266351 Query 518569 ATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACC 518628 |||||| |||||| |||| || ||||| || | ||| | || |||||||| || || || Sbjct 266350 ATCTCCGATCAGACGTTCGGTGTCTGTGAAAGCAACGAACGAAGGAGTTGTTCGGTTTCC 266291 Query 518629 TTGATCATTCGCAATAATTTC 518649 ||| || || || |||||||| Sbjct 266290 TTGGTCGTTGGCGATAATTTC 266270 >seq112 Length=1448063 Score = 206 bits (228), Expect = 2e-47 Identities = 896/1401 (64%), Gaps = 17/1401 (1%) Strand=Plus/Plus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 |||| ||||| | ||||| |||||||| | ||| || ||||| || ||||| || || Sbjct 1246526 GCAGAGACATTCATGATACCGTTGGCATCAATATCGAAGGTGACCTCGATTTGTGGAACA 1246585 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 || | |||||||||| || || | | || |||| ||| || || || || Sbjct 1246586 CCACGAGGAGCAGGTGGAATACCAGTGAGTTCGAACTTTCCGAGAAGGTTGTTGTCCTTT 1246645 Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 517438 ||| ||| ||||||||||| | ||| || || ||| ||| ||||| || | Sbjct 1246646 GTGCGCGTTCTCTCACCCTCGAAGACTTGAATCAAGACACCAGGTTGGTTATCGGAGAAG 1246705 Query 517439 GTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTC 517498 || | || ||| || || || ||||| || ||||| | | ||| | |||||| Sbjct 1246706 GTAGAGAAGACTTCAGACTTCTTGGTGGGAATGGTGGTGTTGCGGTGAATGAGCTTGGTC 1246765 Query 517499 ATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATA 517558 || ||||| || || || | ||||||||| | || | |||||| | || | || Sbjct 1246766 ATTTGTCCACCAGCAGTCTCGATACCAAGAGACAATGGCGCGACATCGAGAAGAAGGATC 1246825 Query 517559 T--TTTGAAGTTTTTCATCA-GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 517615 | || | || || || | || | |||| || ||||| || || | ||||| || Sbjct 1246826 TCGTTGGTAGACTTGGATGAAGTGTCACCAGAGAGGATAGCAGCCTGGACGGCAGCGCCG 1246885 Query 517616 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 517675 ||||||||||| |||||||| || | | | ||| | | ||||| ||||| | | Sbjct 1246886 TATGCAACAGCCTCATCAGGGTTGATGGACTTGTTTGGCTCCTTACCGTTGAAGTAGTCG 1246945 Query 517676 GAAAGAAGTTGTCT---TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCA 517732 | | || | ||| ||| | || ||||| | || || || || || || || || Sbjct 1246946 GTGATGAGCT-TCTGGATACGT--GGGATACGGGTGGAACCACCGACCAAGACGATCTCG 1247002 Query 517733 TGCAC-CTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC-GGGTTCAAGAC 517790 || || ||| ||||| || | || | || | || || || ||||| | Sbjct 1247003 TGGACTCTG-GATTTGTCGATCTTGGCGTCAGCGAGGACACGGTCGACTGGGTTGGTGGT 1247061 Query 517791 CCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTAT 517850 | || || | |||| |||||||| ||||| ||| | ||| | || | | Sbjct 1247062 G-GATCGGAAGAGGTCTTGGCAAAGTTCCTCGAAACGAGCACGAGTGATAGAGGTGTAGA 1247120 Query 517851 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 517910 | || || || ||||| | ||| || | ||| || | || || | || || || || | Sbjct 1247121 AGTCGATACCCTCGAAGAGAGAGTCGATTTCGATGGATGTCTGGGCAGAGGAGGAGAGGG 1247180 Query 517911 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGC-TGATTGATTC 517969 ||| ||||||||||| ||||| || | || | || | || || | | || || Sbjct 1247181 TACGCTTAGCACGTTCGCATGCAGTGCGGAGACGACGAAGAGCACGAGCGTTAGTGCTT- 1247239 Query 517970 AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCA 518029 |||||| | || | || | |||||| || | || | | || ||||| || || Sbjct 1247240 AAATCTTTCTTGTGCTTGCGCTTGAACTCGTTTACGAAGTGGTTAACGAGACGGTTGTCG 1247299 Query 518030 AAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCT 518089 || || ||||| ||||| | ||| | || | || | | |||| || | || || Sbjct 1247300 AAGTCCTCACCACCCAAGTGAGTGTCACCGGCGGTGGACTTGACTTCAAAGATACCCTCC 1247359 Query 518090 TCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTC 518149 |||| | ||| |||| ||||| |||||| ||||| | ||| || || || || || Sbjct 1247360 TCAATGGTCAAGAGAGAAACATCGAAGGTTCCTCCACCAAGATCGAAGATGAGAACGTTT 1247419 Query 518150 ATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTA 518209 || || || || || | ||| || |||| ||||| ||||| || || || Sbjct 1247420 CGCTCACCCTCAACCTTCTTGTCCAAACCGTAAGCAATGGCAGCTGCAGTAGGCTCGTTG 1247479 Query 518210 ATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGT 518269 || || | | |||||| ||||| || || ||||||||||| |||||||| | ||| Sbjct 1247480 ATGATACGGAGAACATTGAGACCGGCGATGAGACCTGCATCTTTTGTGGCTTGACGTTGG 1247539 Query 518270 GAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAA 518329 || ||| | || ||||| |||||||| | || || | | || | ||| | || Sbjct 1247540 GAGTCGGTGAAGTATGCTGGAACAGTGACGACAGCGTTGTTGACGGTTCCACCGAGGTAG 1247599 Query 518330 GCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATAT 518389 || || || | |||| || || | ||| || || |||| ||| || | || Sbjct 1247600 GCCTCAGCAGTCTCCCTCATCTTGACCAAGACCATCGAGGAGATTTCTTCGGGTGTGAAT 1247659 Query 518390 TGCTTGGATTC-ATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAAC 518448 ||||| | || |||| | ||||||| ||| || ||| | || || Sbjct 1247660 TGCTTAGCCTCGCCCTTGA-ACTCGACTTCAATGACTGGCTTTCCGCCACGGTCGATGAC 1247718 Query 518449 TTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAAT 518508 || ||||| ||| |||||||| | ||| || | |||| || | | ||| || Sbjct 1247719 CTTGAATGGGAAGTGCTTCATATCAGCTTGGACTTCTGGGTCGGCGAATTTACGACCGAT 1247778 Query 518509 TAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGC 518568 | || || ||||| || | || || || || || || || |||| | || || || Sbjct 1247779 CAGACGCTTAGCATCGAAGACTGTGTTTGTAGGGTTCATGGCGACTTGGTTCTTTGCGGC 1247838 Query 518569 ATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACC 518628 |||||| |||||| |||| || ||||| || | ||| | || |||||||| || || || Sbjct 1247839 ATCTCCGATCAGACGTTCGGTGTCTGTGAAAGCAACGAACGAAGGAGTTGTTCGGTTTCC 1247898 Query 518629 TTGATCATTCGCAATAATTTC 518649 ||| || || || |||||||| Sbjct 1247899 TTGGTCGTTGGCGATAATTTC 1247919 >seq181 Length=1902219 Score = 86.0 bits (94), Expect = 5e-11 Identities = 134/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 671612 TCCAGAGGTTTTTGTCGA-AATTCTTTTATTGAGGGTCTTGGACCTTTTGAATTTTTCTT 671670 || |||||||| || || ||||| | | || |||||| || |||||| ||||| Sbjct 874279 TCGAGAGGTTTC-GTTGAGAATTCATATCTTAGAGGTCTTACCCCCACTGAATTCTTCTT 874221 Query 671671 CCAAGTAATGGCAGGTCGTGAAGGTATTATTAATACGGCTATTAAAACTGCTGATACTGG 671730 ||| | ||||| |||||||||||| | || |||| || | || || || || ||||| Sbjct 874220 CCACGCCATGGCTGGTCGTGAAGGTTTGATCGATACTGCAGTCAAGACCGCAGAAACTGG 874161 Query 671731 TTATATTCAAAGAAAACTTGTTAAAATGCTCGAAGATATCAAACAAGAATATGATGGTAC 671790 ||| |||||| | ||||| ||| || |||||| ||| ||||||| ||||| Sbjct 874160 TTACATTCAACGTCGTCTTGTCAAAGCTCTTGAAGATGTCATGGCGAAATATGACGGTAC 874101 Query 671791 AGTAAGAAA 671799 ||| |||| Sbjct 874100 AGTCCGAAA 874092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780809646813442