Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12- 14] 257 sequences; 43,359,131 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq156 167 3e-36 >seq156 Length=541452 Score = 167 bits (184), Expect = 3e-36 Identities = 215/295 (73%), Gaps = 4/295 (1%) Strand=Plus/Plus Query 153747 GATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCAT 153806 ||||||||| | || | | ||| | |||||| | || | |||||||||||||| ||| Sbjct 435998 GATATTGCTTTTGGAAATGCTCAACGTTTTGGTGTACCCTTCGGATATGGAGGTCCCCAT 436057 Query 153807 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGT 153866 ||||| |||||||| | || ||||| ||| ||||||| || || | | | ||| Sbjct 436058 GCTGCTTTCTTTGCTGTTAGCGAAAAGTACAAGCGAAAGATTCCCGGACGTCTCATTGGT 436117 Query 153867 CAGTC--AGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGC 153924 ||| || | | | || || |||| || ||||| ||||||||||| ||||| | Sbjct 436118 GTGTCGAAGGACAGATTG--GGCGATAAGGCTATGAGATTGGCACTACAGACCAGAGAAC 436175 Query 153925 AGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTA 153984 |||||||||| || || || || || ||||| ||||||||||||| ||| ||||||||| Sbjct 436176 AGCATATCAGAAGGGAGAAGGCTACTAGTAATGTCTGCACAGCTCAAGCATTGCTGGCTA 436235 Query 153985 ATATGTCTGGATTCTATGCAGCATATCATGGTGCAGATGGACTACATGCTATAGC 154039 ||||| | ||||||||| | || |||||| | | ||||| | ||||| || Sbjct 436236 ATATGAGCGCATTCTATGCTGTCTACCATGGTCCTCAAGGACTCAAGGCTATTGC 436290 Score = 114 bits (126), Expect = 1e-20 Identities = 168/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 154872 ATTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTA-GACAGATATG 154930 |||||||||||||||||| |||| |||||||| || | | |||| | | | | || Sbjct 437189 ATTATGATTACATACCCAAGTACATTCGGTGTATTCGAGCCAGAGATTAAGGCTGCT-TG 437247 Query 154931 TAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACA 154990 | | || |||||| | | || ||||| || || | || || || ||| | ||||| || Sbjct 437248 TGATATTGTTCATCAGCACGGCGGTCAAGTCTACATGGACGGTGCCAATATGAATGCTCA 437307 Query 154991 GGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAA 155050 | || | || ||||| |||||| ||||| |||||||| ||| | || || Sbjct 437308 AATTGGGTTGTGTTCGCCTGGTGAGATTGGTGCTGATGTCTGTCATCTCAACCTTCACAA 437367 Query 155051 AACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGTA 155105 |||||||||||||||||||| || ||||| || || || || || || |||||| Sbjct 437368 GACATTCTGTATTCCACATGGTGGCGGAGGACCAGGTGTTGGACCAATTGGTGTA 437422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579210939278880