Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12-
14] 257 sequences; 43,359,131 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq89 122 6e-23
seq247 100 2e-16
seq112 100 2e-16
>seq89
Length=741344
Score = 122 bits (134), Expect = 6e-23
Identities = 156/213 (73%), Gaps = 8/213 (4%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||||| ||| ||| || || ||||| ||||| |||||| | ||| |||| ||
Sbjct 321536 ACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCTTCG 321595
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|| || || ||||| || || || |||||||| || | || | |||||||||||
Sbjct 321596 AGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCCTGG 321655
Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948
||||| ||||| || | ||||| ||| || ||||| |||| ||| |||||
Sbjct 321656 ATCTTGGACTTGAC--AT--TGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGT 321711
Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
||| |||||||| || || || |||||||||||
Sbjct 321712 TTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 321744
>seq247
Length=916335
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | ||||| || ||||||||||| || || ||||| ||| |||| |||
Sbjct 302387 ACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCATCCTCC 302446
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
| ||| ||||| ||||| || | ||| || ||||| | || | ||||||||||| |
Sbjct 302447 AACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTGA 302506
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
||||| ||||| | || | || | || || || | || ||||| |||
Sbjct 302507 ATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTCTTT 302566
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| || | |||||| || ||||||||||||
Sbjct 302567 CCAGTCAAAGTCTTGACGAAGATCTGCATA 302596
Score = 91.5 bits (100), Expect = 1e-13
Identities = 150/215 (70%), Gaps = 10/215 (5%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
||||| || | |||| |||||||| ||||| ||||| || || | || |||| ||
Sbjct 302615 ACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCCTCA 302674
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|| || || || ||||| || || ||||||||||| | || | |||||||| ||
Sbjct 302675 AGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCTTGG 302734
Query 34893 ATCTTCTGTTTGACG-----GATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947
||||| ||| ||| |||| |||| | || | |||||| || | || || |
Sbjct 302735 ATCTTTGATTTCACGTTGTCGATGGTATC---TGAC--GACTCAACCTCCAATGTGATTG 302789
Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
| ||||| || || ||||| || ||||| ||||||
Sbjct 302790 TCTTTCCGGTAAGTGTCTTGACGAAGATTTGCATA 302824
>seq112
Length=1448063
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||| | ||||| || ||||||||||| || || ||||| ||| |||| |||
Sbjct 1211802 ACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCATCCTCC 1211743
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
| ||| ||||| ||||| || | ||| || ||||| | || | ||||||||||| |
Sbjct 1211742 AACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTGA 1211683
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
||||| ||||| | || | || | || || || | || ||||| |||
Sbjct 1211682 ATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTCTTT 1211623
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| || | |||||| || ||||||||||||
Sbjct 1211622 CCAGTCAAAGTCTTGACGAAGATCTGCATA 1211593
Score = 91.5 bits (100), Expect = 1e-13
Identities = 128/180 (71%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 34794 TTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATT 34853
|| |||||||| ||||| |||||| ||||| | || || || || |||||||| || ||
Sbjct 15702 TTTTGAATGTTGTAGTCTGAAAGGGTTCGTCCGTCCTCGAGTTGCTTTCCGGCGAAGATC 15643
Query 34854 AGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT 34913
| ||||| ||||| | || | ||||||||||| ||||| ||||| |
Sbjct 15642 AAACGTTGTTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCA 15583
Query 34914 ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAG 34973
|| | ||| || ||| || || | ||| ||||| |||||||| || ||||| || |||
Sbjct 15582 ATAGTATCAGAGGACTCGACCTCAAGGGTGATGGTCTTTCCCGTAAGGGTCTTGACGAAG 15523
Score = 91.5 bits (100), Expect = 1e-13
Identities = 150/215 (70%), Gaps = 10/215 (5%)
Strand=Plus/Minus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
||||| || | |||| |||||||| ||||| ||||| || || | || |||| ||
Sbjct 1211574 ACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGTGCGGCCATCCTCA 1211515
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|| || || || ||||| || || ||||||||||| | || | |||||||| ||
Sbjct 1211514 AGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACCCTCCTTATCTTGG 1211455
Query 34893 ATCTTCTGTTTGACG-----GATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947
||||| ||| ||| |||| |||| | || | |||||| || | || || |
Sbjct 1211454 ATCTTTGATTTCACGTTGTCGATGGTATC---TGAC--GACTCAACCTCCAATGTGATTG 1211400
Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
| ||||| || || ||||| || ||||| ||||||
Sbjct 1211399 TCTTTCCGGTAAGTGTCTTGACGAAGATTTGCATA 1211365
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324632583186696
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |