Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12- 14] 257 sequences; 43,359,131 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq247 131 1e-24 seq112 131 1e-24 seq202 98.7 8e-15 seq188 98.7 8e-15 >seq247 Length=916335 Score = 131 bits (144), Expect = 1e-24 Identities = 316/475 (67%), Gaps = 4/475 (1%) Strand=Plus/Plus Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 |||||||| ||||| || ||||| ||| |||| ||||| || | ||| ||||||| || Sbjct 266270 GAAATTATCGCCAACGACCAAGGAAACCGAACAACTCCTTCGTTCGTTGCTTTCACAGAC 266329 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174 || |||| | | | || ||||| ||||| | |||| | | || ||||| || || Sbjct 266330 ACCGAACGTCTGATCGGAGATGCCGCAAAGAACCAAGTCGCCATGAACCCTACAAACACA 266389 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 | || |||||||| ||| | || || | | || || | || || || ||| Sbjct 266390 GTCTTCGATGCTAAGCGTCTGATCGGTCGTAAATTCGCCGACCCAGAAGTCCAAGCTGAT 266449 Query 550235 ATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-CTAC 550293 |||||||| | || ||| | | | | | ||||| || ||||||| | | Sbjct 266450 ATGAAGCACTTCCCATTCAAGGTCATCGACCGTGGCGGAAAGCCAGTCATTGAAGTCGAG 266509 Query 550294 TCATGAAGGATCTGT-TAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGA 550352 | | |||| | ||| ||||| |||| ||| |||| || || ||||| || | | Sbjct 266510 T--TCAAGGGCGAGGCTAAGCAATTCACACCCGAAGAAATCTCCTCGATGGTCTTGGTCA 266567 Query 550353 AAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTG 550412 | |||| | || || || | | ||| | || | | || || | |||| Sbjct 266568 AGATGAGGGAGACTGCTGAGGCCTACCTCGGTGGAACCGTCAACAACGCTGTCGTCACTG 266627 Query 550413 TACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTG 550472 | |||||||| || | ||||| ||||||||||| || |||||||| || | || || | Sbjct 266628 TTCCAGCATACTTCACCGACTCCCAACGTCAAGCCACAAAAGATGCAGGTCTCATCGCCG 266687 Query 550473 GACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 | || |||||||| ||||| ||||| || |||||||| ||||| |||| || || Sbjct 266688 GTCTCAATGTTCTCCGTATCATCAACGAGCCTACTGCAGCTGCCATTGCTTACGG 266742 Score = 127 bits (140), Expect = 2e-23 Identities = 260/384 (68%), Gaps = 3/384 (1%) Strand=Plus/Plus Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269 || || |||||||||||||| || || || || | || || ||||| || ||||| | Sbjct 267281 AACCCTGATGAGGCTGTTGCATACGGCGCTGCCGTCCAGGCTGCTATCCTCTCTGGTGAC 267340 Query 552270 ACTG-ATGAAAAACTACAAA--ATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGT 552326 ||| || || |||| || | || | ||| | ||||| | || | ||||||||| Sbjct 267341 ACTTCATCCAAGTCTACCAACGAGATCCTTCTTCTCGATGTCGCGCCATTGTCTCTTGGT 267400 Query 552327 TTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGT 552386 | || || | ||| || ||||| || || || | | || || || ||||| Sbjct 267401 ATCGAGACTGCTGGTGGACAAATGACCAAGCTCATTCACCGCAACACCACCATTCCCACC 267460 Query 552387 AAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATT 552446 || || ||| || || ||||| | || ||||| ||| ||| ||| |||||| | Sbjct 267461 AAGAAGTCTGAAGTCTTCTCTACCTTCTCCGATAACCAACCTGGTGTCTTGATTCAAGTC 267520 Query 552447 TTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAA 552506 || || || || |||| ||| || || || || | || || | || | | Sbjct 267521 TTCGAGGGTGAGAGAACGCGCACAAAGGACAACAACCTTCTCGGAAAGTTCGAACTCACT 267580 Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 |||||||| |||||||||||||| || || ||||| || || || |||||||| |||||| Sbjct 267581 GGTATTCCACCTGCTCCTCGTGGTGTTCCACAAATCGAGGTCACCTTCGATATTGATGCC 267640 Query 552567 AATGGAATTTTGAATGTGACTGCT 552590 || || || ||||||| ||||| Sbjct 267641 AACGGTATCATGAATGTCTCTGCT 267664 >seq112 Length=1448063 Score = 131 bits (144), Expect = 1e-24 Identities = 316/475 (67%), Gaps = 4/475 (1%) Strand=Plus/Minus Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 |||||||| ||||| || ||||| ||| |||| ||||| || | ||| ||||||| || Sbjct 1247919 GAAATTATCGCCAACGACCAAGGAAACCGAACAACTCCTTCGTTCGTTGCTTTCACAGAC 1247860 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174 || |||| | | | || ||||| ||||| | |||| | | || ||||| || || Sbjct 1247859 ACCGAACGTCTGATCGGAGATGCCGCAAAGAACCAAGTCGCCATGAACCCTACAAACACA 1247800 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 | || |||||||| ||| | || || | | || || | || || || ||| Sbjct 1247799 GTCTTCGATGCTAAGCGTCTGATCGGTCGTAAATTCGCCGACCCAGAAGTCCAAGCTGAT 1247740 Query 550235 ATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-CTAC 550293 |||||||| | || ||| | | | | | ||||| || ||||||| | | Sbjct 1247739 ATGAAGCACTTCCCATTCAAGGTCATCGACCGTGGCGGAAAGCCAGTCATTGAAGTCGAG 1247680 Query 550294 TCATGAAGGATCTGT-TAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGA 550352 | | |||| | ||| ||||| |||| ||| |||| || || ||||| || | | Sbjct 1247679 T--TCAAGGGCGAGGCTAAGCAATTCACACCCGAAGAAATCTCCTCGATGGTCTTGGTCA 1247622 Query 550353 AAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTG 550412 | |||| | || || || | | ||| | || | | || || | |||| Sbjct 1247621 AGATGAGGGAGACTGCTGAGGCCTACCTCGGTGGAACCGTCAACAACGCTGTCGTCACTG 1247562 Query 550413 TACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTG 550472 | |||||||| || | ||||| ||||||||||| || |||||||| || | || || | Sbjct 1247561 TTCCAGCATACTTCACCGACTCCCAACGTCAAGCCACAAAAGATGCAGGTCTCATCGCCG 1247502 Query 550473 GACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 | || |||||||| ||||| ||||| || |||||||| ||||| |||| || || Sbjct 1247501 GTCTCAATGTTCTCCGTATCATCAACGAGCCTACTGCAGCTGCCATTGCTTACGG 1247447 Score = 127 bits (140), Expect = 2e-23 Identities = 260/384 (68%), Gaps = 3/384 (1%) Strand=Plus/Minus Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269 || || |||||||||||||| || || || || | || || ||||| || ||||| | Sbjct 1246908 AACCCTGATGAGGCTGTTGCATACGGCGCTGCCGTCCAGGCTGCTATCCTCTCTGGTGAC 1246849 Query 552270 ACTG-ATGAAAAACTACAAA--ATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGT 552326 ||| || || |||| || | || | ||| | ||||| | || | ||||||||| Sbjct 1246848 ACTTCATCCAAGTCTACCAACGAGATCCTTCTTCTCGATGTCGCGCCATTGTCTCTTGGT 1246789 Query 552327 TTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGT 552386 | || || | ||| || ||||| || || || | | || || || ||||| Sbjct 1246788 ATCGAGACTGCTGGTGGACAAATGACCAAGCTCATTCACCGCAACACCACCATTCCCACC 1246729 Query 552387 AAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATT 552446 || || ||| || || ||||| | || ||||| ||| ||| ||| |||||| | Sbjct 1246728 AAGAAGTCTGAAGTCTTCTCTACCTTCTCCGATAACCAACCTGGTGTCTTGATTCAAGTC 1246669 Query 552447 TTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAA 552506 || || || || |||| ||| || || || || | || || | || | | Sbjct 1246668 TTCGAGGGTGAGAGAACGCGCACAAAGGACAACAACCTTCTCGGAAAGTTCGAACTCACT 1246609 Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 |||||||| |||||||||||||| || || ||||| || || || |||||||| |||||| Sbjct 1246608 GGTATTCCACCTGCTCCTCGTGGTGTTCCACAAATCGAGGTCACCTTCGATATTGATGCC 1246549 Query 552567 AATGGAATTTTGAATGTGACTGCT 552590 || || || ||||||| ||||| Sbjct 1246548 AACGGTATCATGAATGTCTCTGCT 1246525 >seq202 Length=271491 Score = 98.7 bits (108), Expect = 8e-15 Identities = 257/390 (66%), Gaps = 8/390 (2%) Strand=Plus/Plus Query 552210 AATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAA 552269 || || ||||||||||| || | |||||||| |||||| | | || | || ||| Sbjct 57875 AACCCTGATGAGGCTGTCGCTTTCGGTGCCGCTGTTCAAGGTGGTGTTTTGTCCGGA--- 57931 Query 552270 ACTGATGAAAA-ACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTT 552328 || ||| ||| | | || || || | ||||| | || | |||||||| | Sbjct 57932 ---GAGGAAGGTACTG-ATGACATCGTTCTCATGGATGTCAACCCATTGACTCTTGGTAT 57987 Query 552329 AGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAA 552388 || || ||||||| ||||||| || | ||| ||||| || ||| ||| Sbjct 57988 TGAGACTACTGGAGGTGTTATGACCAAGTTGATCCCAAGAAACACCGTTATCCCTACCCG 58047 Query 552389 AAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTT 552448 ||||||| | || || || | || || ||| | | || |||||| | | Sbjct 58048 CAAATCTCAAATCTTCTCCACAGCCGCCGACAACCAACCCGTAGTCCTGATTCAAGTCTA 58107 Query 552449 TGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGG 552508 ||||||||| | || || ||||| || || | ||||||| || | || || Sbjct 58108 TGAAGGAGAGCGTGCTTTGACAAAAGACAACAACAACCTTGGTAAATTCGAATTGACTGG 58167 Query 552509 TATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAA 552568 |||||| || || || ||||| || || |||||||||||| | ||||| | || ||||| Sbjct 58168 TATTCCACCAGCACCACGTGGTGTTCCTCAAATTGAAGTTTCCTTCGAACTTGACGCCAA 58227 Query 552569 TGGAATTTTGAATGTGACTGCTTGTGATAA 552598 |||||| ||||| || || ||| |||| || Sbjct 58228 TGGAATCTTGAAGGTTACCGCTGGTGACAA 58257 Score = 87.8 bits (96), Expect = 1e-11 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 549986 AAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAAT 550045 ||| ||| || ||||| ||| | ||||||||||| ||| || ||||| |||||| Sbjct 56739 AAAATAGTCATCGGTATCGATCTTGGAACCACATACTCTTGCGTCGGTGTGATGCAAAAG 56798 Query 550046 GGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCT 550105 || |||||||| ||| | | || || ||||| || | | |||||| || ||||| | Sbjct 56799 GGAAAAGTTGAGATTCTGGTAAACGACCAAGGACACCGTATTACTCCTTCATATGTCGCC 56858 Query 550106 TTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAA 550143 ||||| || |||| ||| || || |||||||| || Sbjct 56859 TTCACCGATGAGGAACGTTTGGTCGGAGATGCAGCCAA 56896 >seq188 Length=597364 Score = 98.7 bits (108), Expect = 8e-15 Identities = 247/373 (66%), Gaps = 2/373 (1%) Strand=Plus/Minus Query 551895 GCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACT 551954 |||||||||||||| ||||| |||||||| | || || || | ||||| ||| | Sbjct 200824 GCTCTTCGTCGTCTTAGAACAGCTTGCGAGCGTGCTAAGCGTACCCTTTCTAACGGTGCC 200765 Query 551955 CAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCG 552014 ||||| ||||| | || ||||| ||||| || || | || | | ||| | Sbjct 200764 TCTACCACCGTTGAAATCGACTCATTGTTTGACGGTGAAGACTTCAACGCACAAATTACC 200705 Query 552015 AGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAA-ACAATTGAACCAGTAGA 552073 | |||| ||| || ||| | | | | || || || | || || || | Sbjct 200704 CGTGCCAGATTCGAGGATCTCAACG-TCAAGGCATTCCAAGGCACTTTGGAGCCCGTTGC 200646 Query 552074 ACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGG 552133 |||||| | | ||| | || || || |||||||| || |||| || || |||||||| Sbjct 200645 GCAAGTTCTCAAGGATGCTAACATCGACAAATCCAAGGTTGATGAGATCGTCCTTGTTGG 200586 Query 552134 TGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTAAGTTCTTATTTCAATGGTAAAAA 552193 ||||||||| | ||||| || ||| | | || || | ||||| || || || Sbjct 200585 TGGATCTACCCGTATTCCCAAGGTTCAAAAGCTCTTGAGCGAGTTCTTCAACGGAAAGAA 200526 Query 552194 ATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGC 552253 || | |||| |||| || |||||||||||||| || ||||| || ||||||| | Sbjct 200525 GTTGGAGAAAAGCATTAACCCTGATGAGGCTGTTGCTTACGGTGCTGCTGTTCAAGCGGG 200466 Query 552254 TATTCTTTCTGGA 552266 ||| || || ||| Sbjct 200465 TATCCTCTCAGGA 200453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029282408680930