Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12- 14] 257 sequences; 43,359,131 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq182 132 9e-26 >seq182 Length=792865 Score = 132 bits (146), Expect = 9e-26 Identities = 338/512 (66%), Gaps = 11/512 (2%) Strand=Plus/Plus Query 25814 GCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGAT-CAACAGCCAGAGCGCTACGTTT 25872 |||| |||| ||| || ||||| | | ||||| ||| | | | | | |||| ||| Sbjct 654691 GCATTAAGAAGAAAGCCGACTGGGCTGTCAGATGGATTCAAGA-CAAAAACTCTACCTTT 654749 Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 | |||| ||||| || ||||||||||| ||||||||||| ||||| || || || || Sbjct 654750 GCTCAGCGTCTGGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTCAGTGGATCATTCGCT 654809 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCT 25991 | ||||||||||||||| || || ||| | || || ||||| ||||| ||||| Sbjct 654810 TCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCT-CACTTTCTCCAATGAGCT 654868 Query 25992 CATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTT 26051 |||| | | || || |||||||| | || || || ||||| |||| | | |||||| Sbjct 654869 CATCTCCCGTGATGAAGGTCTCCATACCGACTTCGCGTGCCTCCTCTTCTC---CCACTT 654925 Query 26052 GCTCCACAAACCTTCTCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCG 26110 | ||| || |||| || | ||| | | |||||| ||||||||| ||||||| Sbjct 654926 GAAGCACCGTCC-AAGCAAGCAGGCTGTCCAAGATGTCATCACAGAGGCTGTTGAGATCG 654984 Query 26111 AGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCA 26170 | | || || | ||||||||| | | | Sbjct 654985 AACAAGAATTCTTGACCGAGGCTCTTCCTTGTGCACTTCTTGGCATGAACGCGAACTTGA 655044 Query 26171 TGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGAC 26230 ||| |||||||| |||| || ||||| | ||| || | || || || | Sbjct 655045 TGAAGCAATACATCGAGTTCGTTGCCGATCGTCTTCTAGTCGCTCTTGGTAACGAGAAGG 655104 Query 26231 TCTAC-AGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACC 26289 | ||| ||| ||| ||||| |||||||| ||||| ||||| || | | ||| ||||| Sbjct 655105 TGTACAAGTCTGCC-AACCCATTCGACTTCATGGAGAACATCTCCCTAGCAGGCAAGACA 655163 Query 26290 AACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 |||||||| || ||||| || || ||||| || Sbjct 655164 AACTTCTTCGAGAAGAGAGTTGGTGACTACCA 655195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928841816086080