Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12- 14] 257 sequences; 43,359,131 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq247 165 5e-35 seq112 165 5e-35 >seq247 Length=916335 Score = 165 bits (182), Expect = 5e-35 Identities = 332/488 (68%), Gaps = 6/488 (1%) Strand=Plus/Plus Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451 ||||| || ||||| |||||||| || ||||||| || || | ||| |||| || || Sbjct 266270 GAAATTATCGCCAACGACCAAGGAAACCGAACAACTCCTTCGTTCGTTGCTTTCACAGAC 266329 Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511 || |||| ||| || |||||||| || || | |||| || || ||| || || Sbjct 266330 ACCGAACGTCTGATCGGAGATGCCGCAAAGAACCAAGTCGCCATGAACCCTACAAACACA 266389 Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571 | || |||||||| | |||| |||||||| || | || | |||||| ||||| Sbjct 266390 GTCTTCGATGCTAAGCGTCTGATCGGTCGTAAATTCGCCGACCCAGAAGTCCAAGCTGAT 266449 Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC--AA 474629 ||| || | || || ||||| || | ||| || || ||| || |||| | Sbjct 266450 ATGAAGCACTTCCCATTCAAGGTCATCGACCGTGGCGGAAAGCCAGTCATTGAAGTCGAG 266509 Query 474630 TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCA 474689 | || | || || |||| ||||| |||| ||| |||| || || ||||| || | || Sbjct 266510 TTCAAG--GGCGAGGCTAAGCAATTCACACCCGAAGAAATCTCCTCGATGGTCTTGGTCA 266567 Query 474690 AAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACT 474748 | |||| | || || ||| | || || || | || | | || || | ||| Sbjct 266568 AGATGAGGGAGACTGCTGAGGCC-TACCTCGGTGGAACCGTCAACAACGCTGTCGTCACT 266626 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 ||||||||||| || | || || ||||||||||| || |||||||| || || || Sbjct 266627 GTTCCAGCATACTTCACCGACTCCCAACGTCAAGCCACAAAAGATGCAGGTCTCATCGCC 266686 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 ||||| |||||| | ||||| || || || || || ||||| || ||||||| ||| | Sbjct 266687 GGTCTCAATGTTCTCCGTATCATCAACGAGCCTACTGCAGCTGCCATTGCTTACGGTTTG 266746 Query 474869 GATAAGAA 474876 || ||||| Sbjct 266747 GACAAGAA 266754 Score = 111 bits (122), Expect = 1e-18 Identities = 451/700 (64%), Gaps = 23/700 (3%) Strand=Plus/Plus Query 475487 CGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACT 475546 ||||| | ||||| || |||||||||||||| | || || || || | || || | Sbjct 266975 CGTCTCCGCACTGCATGCGAACGTGCTAAGCGTACCCTCTCCTCCTCTGCCCAGACATCC 267034 Query 475547 GTTGAAGTTGATTCTCTTTTTGAAGGAATTGA-TTATAATACTCTTATTACAAGGGCTAA 475605 | ||| | || ||||| || || || || || || || |||| || || | ||| Sbjct 267035 ATCGAAATCGACTCTCTCTTCGAGGGTATCGACTTCTACACCTCT-ATCACTCGTGCTCG 267093 Query 475606 ATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCT 475665 || || || |||| || ||||| || || | | || || || | || || Sbjct 267094 TTTCGAGGAACTTTGCCAAGACCTCTTCCGATCCACCACCAACCCAGTCGACCGTGTCCT 267153 Query 475666 CAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAAC 475725 | || | || | |||||||| |||||| || || || | || || ||||| || Sbjct 267154 CGCTGACGCCAAGATCGACAAATCCAGAGTCCACGAGATCGTCTTGGTCGGTGGTTCCAC 267213 Query 475726 AAGAATTCCAAAAATAAGAGAAATGCTTTCATCA-----TATTTTAATGGTAAAAAGTTA 475780 | || ||| || |||| ||| ||||| || || || ||||| || | Sbjct 267214 CCGTATCCCACGTATCC-AGAA--GCT--CATCACCGACTACTTCAACGGTAAGGAGCCA 267268 Query 475781 AATGAAAGTGTA--AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTA 475838 || |||| | || |||||||| ||||||||||| || ||||| ||||| || |||| Sbjct 267269 AAC--AAGTCCATCAACCCTGATGAGGCTGTTGCATACGGCGCTGCCGTCCAGGCTGCTA 267326 Query 475839 TTTTATCAGGTCAA---TCAGACGAGAAACTA--AATAATATTGTACTTGTTGACGTAAC 475893 | | || ||| | ||| | || ||| || | || | ||| | || || | Sbjct 267327 TCCTCTCTGGTGACACTTCATCCAAGT--CTACCAACGAGATCCTTCTTCTCGATGTCGC 267384 Query 475894 TCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAA 475953 ||| | || | ||| | || || | ||| || ||||| || || ||| || | || Sbjct 267385 GCCATTGTCTCTTGGTATCGAGACTGCTGGTGGACAAATGACCAAGCTCATTCACCGCAA 267444 Query 475954 TACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAAC 476013 || | || || ||| || || |||| || || || | || ||||| ||| | Sbjct 267445 CACCACCATTCCCACCAAGAAGTCTGAAGTCTTCTCTACCTTCTCCGATAACCAACCTGG 267504 Query 476014 TGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGG 476073 ||| || ||| |||| || ||||| |||| ||| || || || ||| || || Sbjct 267505 TGTCTTGATTCAAGTCTTCGAGGGTGAGAGAACGCGCACAAAGGACAACAACCTTCTCGG 267564 Query 476074 AACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTAC 476133 || || | || |||||||| |||||||| | || ||||| ||||| || || || Sbjct 267565 AAAGTTCGAACTCACTGGTATTCCACCTGCTCCTCGTGGTGTTCCACAAATCGAGGTCAC 267624 Query 476134 TTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGCT 476173 || ||||||||||| || ||||| | ||||| ||||| Sbjct 267625 CTTCGATATTGATGCCAACGGTATCATGAATGTCTCTGCT 267664 Score = 105 bits (116), Expect = 4e-17 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||||||||| || || | || | || || || || || || ||||||| ||||| Sbjct 302374 ACGAAGACGAAGCACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGT 302433 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 |||| ||| || | |||||||||||||| || | || ||||| || || || || || Sbjct 302434 TCTGCCATCCTCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGGATACC 302493 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||||||||||||| |||||| ||||| ||||| | | | | || ||| Sbjct 302494 CTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCCACTTCCAA 302553 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || || | |||||| ||||| || || Sbjct 302554 -TGTAATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTG 302592 Score = 102 bits (112), Expect = 5e-16 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| || || | ||| ||||| ||||| | || || || | |||||| Sbjct 302602 ACGGAGACGAAGGACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGT 302661 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||| ||||||||||| |||||||| ||||||||||| || || || || || || Sbjct 302662 GCGGCCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACC 302721 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||| ||||| |||||| ||| || || || ||||| | | | || | ||| Sbjct 302722 CTCCTTATCTTGGATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAA 302781 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || ||||| || ||||| ||||| ||||| Sbjct 302782 -TGTGATTGTCTTTCCGGTAAGTGTCTTGACGAAGATTTG 302820 >seq112 Length=1448063 Score = 165 bits (182), Expect = 5e-35 Identities = 332/488 (68%), Gaps = 6/488 (1%) Strand=Plus/Minus Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451 ||||| || ||||| |||||||| || ||||||| || || | ||| |||| || || Sbjct 1247919 GAAATTATCGCCAACGACCAAGGAAACCGAACAACTCCTTCGTTCGTTGCTTTCACAGAC 1247860 Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511 || |||| ||| || |||||||| || || | |||| || || ||| || || Sbjct 1247859 ACCGAACGTCTGATCGGAGATGCCGCAAAGAACCAAGTCGCCATGAACCCTACAAACACA 1247800 Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571 | || |||||||| | |||| |||||||| || | || | |||||| ||||| Sbjct 1247799 GTCTTCGATGCTAAGCGTCTGATCGGTCGTAAATTCGCCGACCCAGAAGTCCAAGCTGAT 1247740 Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC--AA 474629 ||| || | || || ||||| || | ||| || || ||| || |||| | Sbjct 1247739 ATGAAGCACTTCCCATTCAAGGTCATCGACCGTGGCGGAAAGCCAGTCATTGAAGTCGAG 1247680 Query 474630 TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCA 474689 | || | || || |||| ||||| |||| ||| |||| || || ||||| || | || Sbjct 1247679 TTCAAG--GGCGAGGCTAAGCAATTCACACCCGAAGAAATCTCCTCGATGGTCTTGGTCA 1247622 Query 474690 AAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACT 474748 | |||| | || || ||| | || || || | || | | || || | ||| Sbjct 1247621 AGATGAGGGAGACTGCTGAGGCC-TACCTCGGTGGAACCGTCAACAACGCTGTCGTCACT 1247563 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 ||||||||||| || | || || ||||||||||| || |||||||| || || || Sbjct 1247562 GTTCCAGCATACTTCACCGACTCCCAACGTCAAGCCACAAAAGATGCAGGTCTCATCGCC 1247503 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 ||||| |||||| | ||||| || || || || || ||||| || ||||||| ||| | Sbjct 1247502 GGTCTCAATGTTCTCCGTATCATCAACGAGCCTACTGCAGCTGCCATTGCTTACGGTTTG 1247443 Query 474869 GATAAGAA 474876 || ||||| Sbjct 1247442 GACAAGAA 1247435 Score = 111 bits (122), Expect = 1e-18 Identities = 451/700 (64%), Gaps = 23/700 (3%) Strand=Plus/Minus Query 475487 CGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACT 475546 ||||| | ||||| || |||||||||||||| | || || || || | || || | Sbjct 1247214 CGTCTCCGCACTGCATGCGAACGTGCTAAGCGTACCCTCTCCTCCTCTGCCCAGACATCC 1247155 Query 475547 GTTGAAGTTGATTCTCTTTTTGAAGGAATTGA-TTATAATACTCTTATTACAAGGGCTAA 475605 | ||| | || ||||| || || || || || || || |||| || || | ||| Sbjct 1247154 ATCGAAATCGACTCTCTCTTCGAGGGTATCGACTTCTACACCTCT-ATCACTCGTGCTCG 1247096 Query 475606 ATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCT 475665 || || || |||| || ||||| || || | | || || || | || || Sbjct 1247095 TTTCGAGGAACTTTGCCAAGACCTCTTCCGATCCACCACCAACCCAGTCGACCGTGTCCT 1247036 Query 475666 CAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAAC 475725 | || | || | |||||||| |||||| || || || | || || ||||| || Sbjct 1247035 CGCTGACGCCAAGATCGACAAATCCAGAGTCCACGAGATCGTCTTGGTCGGTGGTTCCAC 1246976 Query 475726 AAGAATTCCAAAAATAAGAGAAATGCTTTCATCA-----TATTTTAATGGTAAAAAGTTA 475780 | || ||| || |||| ||| ||||| || || || ||||| || | Sbjct 1246975 CCGTATCCCACGTATCC-AGAA--GCT--CATCACCGACTACTTCAACGGTAAGGAGCCA 1246921 Query 475781 AATGAAAGTGTA--AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTA 475838 || |||| | || |||||||| ||||||||||| || ||||| ||||| || |||| Sbjct 1246920 AAC--AAGTCCATCAACCCTGATGAGGCTGTTGCATACGGCGCTGCCGTCCAGGCTGCTA 1246863 Query 475839 TTTTATCAGGTCAA---TCAGACGAGAAACTA--AATAATATTGTACTTGTTGACGTAAC 475893 | | || ||| | ||| | || ||| || | || | ||| | || || | Sbjct 1246862 TCCTCTCTGGTGACACTTCATCCAAGT--CTACCAACGAGATCCTTCTTCTCGATGTCGC 1246805 Query 475894 TCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAA 475953 ||| | || | ||| | || || | ||| || ||||| || || ||| || | || Sbjct 1246804 GCCATTGTCTCTTGGTATCGAGACTGCTGGTGGACAAATGACCAAGCTCATTCACCGCAA 1246745 Query 475954 TACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAAC 476013 || | || || ||| || || |||| || || || | || ||||| ||| | Sbjct 1246744 CACCACCATTCCCACCAAGAAGTCTGAAGTCTTCTCTACCTTCTCCGATAACCAACCTGG 1246685 Query 476014 TGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGG 476073 ||| || ||| |||| || ||||| |||| ||| || || || ||| || || Sbjct 1246684 TGTCTTGATTCAAGTCTTCGAGGGTGAGAGAACGCGCACAAAGGACAACAACCTTCTCGG 1246625 Query 476074 AACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTAC 476133 || || | || |||||||| |||||||| | || ||||| ||||| || || || Sbjct 1246624 AAAGTTCGAACTCACTGGTATTCCACCTGCTCCTCGTGGTGTTCCACAAATCGAGGTCAC 1246565 Query 476134 TTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGCT 476173 || ||||||||||| || ||||| | ||||| ||||| Sbjct 1246564 CTTCGATATTGATGCCAACGGTATCATGAATGTCTCTGCT 1246525 Score = 105 bits (116), Expect = 4e-17 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||||||||| || || | || | || || || || || || ||||||| ||||| Sbjct 1211815 ACGAAGACGAAGCACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGT 1211756 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 |||| ||| || | |||||||||||||| || | || ||||| || || || || || Sbjct 1211755 TCTGCCATCCTCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGGATACC 1211696 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||||||||||||| |||||| ||||| ||||| | | | | || ||| Sbjct 1211695 CTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCCACTTCCAA 1211636 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || || | |||||| ||||| || || Sbjct 1211635 -TGTAATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTG 1211597 Score = 102 bits (112), Expect = 5e-16 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| || || | ||| ||||| ||||| | || || || | |||||| Sbjct 1211587 ACGGAGACGAAGGACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGT 1211528 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||| ||||||||||| |||||||| ||||||||||| || || || || || || Sbjct 1211527 GCGGCCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACC 1211468 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||| ||||| |||||| ||| || || || ||||| | | | || | ||| Sbjct 1211467 CTCCTTATCTTGGATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAA 1211408 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || ||||| || ||||| ||||| ||||| Sbjct 1211407 -TGTGATTGTCTTTCCGGTAAGTGTCTTGACGAAGATTTG 1211369 Score = 93.3 bits (102), Expect = 3e-13 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || || ||||||||||| || || || | ||||||||| || || |||||||| |||||| Sbjct 15669 TCCTCGAGTTGCTTTCCGGCGAAGATCAAACGTTGTTGGTCCGGGGGAATTCCCTCCTTG 15610 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 || || ||||| |||||| ||||||||||||| | |||||||| || Sbjct 15609 TCCTGGATCTTGGACTTGACATTGTCAATAGTATCAGAGGACTCGACCTCAAGGGTGATG 15550 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAA 480763 || || || || || ||||| ||||| Sbjct 15549 GTCTTTCCCGTAAGGGTCTTGACGAA 15524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268168176023036