Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12-
14] 257 sequences; 43,359,131 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq247 165 5e-35
seq112 165 5e-35
>seq247
Length=916335
Score = 165 bits (182), Expect = 5e-35
Identities = 332/488 (68%), Gaps = 6/488 (1%)
Strand=Plus/Plus
Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451
||||| || ||||| |||||||| || ||||||| || || | ||| |||| || ||
Sbjct 266270 GAAATTATCGCCAACGACCAAGGAAACCGAACAACTCCTTCGTTCGTTGCTTTCACAGAC 266329
Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511
|| |||| ||| || |||||||| || || | |||| || || ||| || ||
Sbjct 266330 ACCGAACGTCTGATCGGAGATGCCGCAAAGAACCAAGTCGCCATGAACCCTACAAACACA 266389
Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571
| || |||||||| | |||| |||||||| || | || | |||||| |||||
Sbjct 266390 GTCTTCGATGCTAAGCGTCTGATCGGTCGTAAATTCGCCGACCCAGAAGTCCAAGCTGAT 266449
Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC--AA 474629
||| || | || || ||||| || | ||| || || ||| || |||| |
Sbjct 266450 ATGAAGCACTTCCCATTCAAGGTCATCGACCGTGGCGGAAAGCCAGTCATTGAAGTCGAG 266509
Query 474630 TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCA 474689
| || | || || |||| ||||| |||| ||| |||| || || ||||| || | ||
Sbjct 266510 TTCAAG--GGCGAGGCTAAGCAATTCACACCCGAAGAAATCTCCTCGATGGTCTTGGTCA 266567
Query 474690 AAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACT 474748
| |||| | || || ||| | || || || | || | | || || | |||
Sbjct 266568 AGATGAGGGAGACTGCTGAGGCC-TACCTCGGTGGAACCGTCAACAACGCTGTCGTCACT 266626
Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808
||||||||||| || | || || ||||||||||| || |||||||| || || ||
Sbjct 266627 GTTCCAGCATACTTCACCGACTCCCAACGTCAAGCCACAAAAGATGCAGGTCTCATCGCC 266686
Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868
||||| |||||| | ||||| || || || || || ||||| || ||||||| ||| |
Sbjct 266687 GGTCTCAATGTTCTCCGTATCATCAACGAGCCTACTGCAGCTGCCATTGCTTACGGTTTG 266746
Query 474869 GATAAGAA 474876
|| |||||
Sbjct 266747 GACAAGAA 266754
Score = 111 bits (122), Expect = 1e-18
Identities = 451/700 (64%), Gaps = 23/700 (3%)
Strand=Plus/Plus
Query 475487 CGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACT 475546
||||| | ||||| || |||||||||||||| | || || || || | || || |
Sbjct 266975 CGTCTCCGCACTGCATGCGAACGTGCTAAGCGTACCCTCTCCTCCTCTGCCCAGACATCC 267034
Query 475547 GTTGAAGTTGATTCTCTTTTTGAAGGAATTGA-TTATAATACTCTTATTACAAGGGCTAA 475605
| ||| | || ||||| || || || || || || || |||| || || | |||
Sbjct 267035 ATCGAAATCGACTCTCTCTTCGAGGGTATCGACTTCTACACCTCT-ATCACTCGTGCTCG 267093
Query 475606 ATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCT 475665
|| || || |||| || ||||| || || | | || || || | || ||
Sbjct 267094 TTTCGAGGAACTTTGCCAAGACCTCTTCCGATCCACCACCAACCCAGTCGACCGTGTCCT 267153
Query 475666 CAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAAC 475725
| || | || | |||||||| |||||| || || || | || || ||||| ||
Sbjct 267154 CGCTGACGCCAAGATCGACAAATCCAGAGTCCACGAGATCGTCTTGGTCGGTGGTTCCAC 267213
Query 475726 AAGAATTCCAAAAATAAGAGAAATGCTTTCATCA-----TATTTTAATGGTAAAAAGTTA 475780
| || ||| || |||| ||| ||||| || || || ||||| || |
Sbjct 267214 CCGTATCCCACGTATCC-AGAA--GCT--CATCACCGACTACTTCAACGGTAAGGAGCCA 267268
Query 475781 AATGAAAGTGTA--AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTA 475838
|| |||| | || |||||||| ||||||||||| || ||||| ||||| || ||||
Sbjct 267269 AAC--AAGTCCATCAACCCTGATGAGGCTGTTGCATACGGCGCTGCCGTCCAGGCTGCTA 267326
Query 475839 TTTTATCAGGTCAA---TCAGACGAGAAACTA--AATAATATTGTACTTGTTGACGTAAC 475893
| | || ||| | ||| | || ||| || | || | ||| | || || |
Sbjct 267327 TCCTCTCTGGTGACACTTCATCCAAGT--CTACCAACGAGATCCTTCTTCTCGATGTCGC 267384
Query 475894 TCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAA 475953
||| | || | ||| | || || | ||| || ||||| || || ||| || | ||
Sbjct 267385 GCCATTGTCTCTTGGTATCGAGACTGCTGGTGGACAAATGACCAAGCTCATTCACCGCAA 267444
Query 475954 TACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAAC 476013
|| | || || ||| || || |||| || || || | || ||||| ||| |
Sbjct 267445 CACCACCATTCCCACCAAGAAGTCTGAAGTCTTCTCTACCTTCTCCGATAACCAACCTGG 267504
Query 476014 TGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGG 476073
||| || ||| |||| || ||||| |||| ||| || || || ||| || ||
Sbjct 267505 TGTCTTGATTCAAGTCTTCGAGGGTGAGAGAACGCGCACAAAGGACAACAACCTTCTCGG 267564
Query 476074 AACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTAC 476133
|| || | || |||||||| |||||||| | || ||||| ||||| || || ||
Sbjct 267565 AAAGTTCGAACTCACTGGTATTCCACCTGCTCCTCGTGGTGTTCCACAAATCGAGGTCAC 267624
Query 476134 TTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGCT 476173
|| ||||||||||| || ||||| | ||||| |||||
Sbjct 267625 CTTCGATATTGATGCCAACGGTATCATGAATGTCTCTGCT 267664
Score = 105 bits (116), Expect = 4e-17
Identities = 157/220 (71%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||||||||| || || | || | || || || || || || ||||||| |||||
Sbjct 302374 ACGAAGACGAAGCACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGT 302433
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
|||| ||| || | |||||||||||||| || | || ||||| || || || || ||
Sbjct 302434 TCTGCCATCCTCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGGATACC 302493
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729
|||||||||||||||||| |||||| ||||| ||||| | | | | || |||
Sbjct 302494 CTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCCACTTCCAA 302553
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
||||| || || || || | |||||| ||||| || ||
Sbjct 302554 -TGTAATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTG 302592
Score = 102 bits (112), Expect = 5e-16
Identities = 156/220 (71%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||| ||||| || || | ||| ||||| ||||| | || || || | ||||||
Sbjct 302602 ACGGAGACGAAGGACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGT 302661
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| | ||| ||||||||||| |||||||| ||||||||||| || || || || || ||
Sbjct 302662 GCGGCCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACC 302721
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729
||||| ||||| |||||| ||| || || || ||||| | | | || | |||
Sbjct 302722 CTCCTTATCTTGGATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAA 302781
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || || || ||||| || ||||| ||||| |||||
Sbjct 302782 -TGTGATTGTCTTTCCGGTAAGTGTCTTGACGAAGATTTG 302820
>seq112
Length=1448063
Score = 165 bits (182), Expect = 5e-35
Identities = 332/488 (68%), Gaps = 6/488 (1%)
Strand=Plus/Minus
Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451
||||| || ||||| |||||||| || ||||||| || || | ||| |||| || ||
Sbjct 1247919 GAAATTATCGCCAACGACCAAGGAAACCGAACAACTCCTTCGTTCGTTGCTTTCACAGAC 1247860
Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511
|| |||| ||| || |||||||| || || | |||| || || ||| || ||
Sbjct 1247859 ACCGAACGTCTGATCGGAGATGCCGCAAAGAACCAAGTCGCCATGAACCCTACAAACACA 1247800
Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571
| || |||||||| | |||| |||||||| || | || | |||||| |||||
Sbjct 1247799 GTCTTCGATGCTAAGCGTCTGATCGGTCGTAAATTCGCCGACCCAGAAGTCCAAGCTGAT 1247740
Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC--AA 474629
||| || | || || ||||| || | ||| || || ||| || |||| |
Sbjct 1247739 ATGAAGCACTTCCCATTCAAGGTCATCGACCGTGGCGGAAAGCCAGTCATTGAAGTCGAG 1247680
Query 474630 TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCA 474689
| || | || || |||| ||||| |||| ||| |||| || || ||||| || | ||
Sbjct 1247679 TTCAAG--GGCGAGGCTAAGCAATTCACACCCGAAGAAATCTCCTCGATGGTCTTGGTCA 1247622
Query 474690 AAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACT 474748
| |||| | || || ||| | || || || | || | | || || | |||
Sbjct 1247621 AGATGAGGGAGACTGCTGAGGCC-TACCTCGGTGGAACCGTCAACAACGCTGTCGTCACT 1247563
Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808
||||||||||| || | || || ||||||||||| || |||||||| || || ||
Sbjct 1247562 GTTCCAGCATACTTCACCGACTCCCAACGTCAAGCCACAAAAGATGCAGGTCTCATCGCC 1247503
Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868
||||| |||||| | ||||| || || || || || ||||| || ||||||| ||| |
Sbjct 1247502 GGTCTCAATGTTCTCCGTATCATCAACGAGCCTACTGCAGCTGCCATTGCTTACGGTTTG 1247443
Query 474869 GATAAGAA 474876
|| |||||
Sbjct 1247442 GACAAGAA 1247435
Score = 111 bits (122), Expect = 1e-18
Identities = 451/700 (64%), Gaps = 23/700 (3%)
Strand=Plus/Minus
Query 475487 CGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACT 475546
||||| | ||||| || |||||||||||||| | || || || || | || || |
Sbjct 1247214 CGTCTCCGCACTGCATGCGAACGTGCTAAGCGTACCCTCTCCTCCTCTGCCCAGACATCC 1247155
Query 475547 GTTGAAGTTGATTCTCTTTTTGAAGGAATTGA-TTATAATACTCTTATTACAAGGGCTAA 475605
| ||| | || ||||| || || || || || || || |||| || || | |||
Sbjct 1247154 ATCGAAATCGACTCTCTCTTCGAGGGTATCGACTTCTACACCTCT-ATCACTCGTGCTCG 1247096
Query 475606 ATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCT 475665
|| || || |||| || ||||| || || | | || || || | || ||
Sbjct 1247095 TTTCGAGGAACTTTGCCAAGACCTCTTCCGATCCACCACCAACCCAGTCGACCGTGTCCT 1247036
Query 475666 CAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAAC 475725
| || | || | |||||||| |||||| || || || | || || ||||| ||
Sbjct 1247035 CGCTGACGCCAAGATCGACAAATCCAGAGTCCACGAGATCGTCTTGGTCGGTGGTTCCAC 1246976
Query 475726 AAGAATTCCAAAAATAAGAGAAATGCTTTCATCA-----TATTTTAATGGTAAAAAGTTA 475780
| || ||| || |||| ||| ||||| || || || ||||| || |
Sbjct 1246975 CCGTATCCCACGTATCC-AGAA--GCT--CATCACCGACTACTTCAACGGTAAGGAGCCA 1246921
Query 475781 AATGAAAGTGTA--AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTA 475838
|| |||| | || |||||||| ||||||||||| || ||||| ||||| || ||||
Sbjct 1246920 AAC--AAGTCCATCAACCCTGATGAGGCTGTTGCATACGGCGCTGCCGTCCAGGCTGCTA 1246863
Query 475839 TTTTATCAGGTCAA---TCAGACGAGAAACTA--AATAATATTGTACTTGTTGACGTAAC 475893
| | || ||| | ||| | || ||| || | || | ||| | || || |
Sbjct 1246862 TCCTCTCTGGTGACACTTCATCCAAGT--CTACCAACGAGATCCTTCTTCTCGATGTCGC 1246805
Query 475894 TCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAA 475953
||| | || | ||| | || || | ||| || ||||| || || ||| || | ||
Sbjct 1246804 GCCATTGTCTCTTGGTATCGAGACTGCTGGTGGACAAATGACCAAGCTCATTCACCGCAA 1246745
Query 475954 TACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAAC 476013
|| | || || ||| || || |||| || || || | || ||||| ||| |
Sbjct 1246744 CACCACCATTCCCACCAAGAAGTCTGAAGTCTTCTCTACCTTCTCCGATAACCAACCTGG 1246685
Query 476014 TGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGG 476073
||| || ||| |||| || ||||| |||| ||| || || || ||| || ||
Sbjct 1246684 TGTCTTGATTCAAGTCTTCGAGGGTGAGAGAACGCGCACAAAGGACAACAACCTTCTCGG 1246625
Query 476074 AACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTAC 476133
|| || | || |||||||| |||||||| | || ||||| ||||| || || ||
Sbjct 1246624 AAAGTTCGAACTCACTGGTATTCCACCTGCTCCTCGTGGTGTTCCACAAATCGAGGTCAC 1246565
Query 476134 TTTTGATATTGATGCAAATGGTATTCTTAATGTTACTGCT 476173
|| ||||||||||| || ||||| | ||||| |||||
Sbjct 1246564 CTTCGATATTGATGCCAACGGTATCATGAATGTCTCTGCT 1246525
Score = 105 bits (116), Expect = 4e-17
Identities = 157/220 (71%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||||||||| || || | || | || || || || || || ||||||| |||||
Sbjct 1211815 ACGAAGACGAAGCACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGT 1211756
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
|||| ||| || | |||||||||||||| || | || ||||| || || || || ||
Sbjct 1211755 TCTGCCATCCTCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGGATACC 1211696
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729
|||||||||||||||||| |||||| ||||| ||||| | | | | || |||
Sbjct 1211695 CTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATGGTATCTGACGATTCCACTTCCAA 1211636
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
||||| || || || || | |||||| ||||| || ||
Sbjct 1211635 -TGTAATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTG 1211597
Score = 102 bits (112), Expect = 5e-16
Identities = 156/220 (71%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||| ||||| || || | ||| ||||| ||||| | || || || | ||||||
Sbjct 1211587 ACGGAGACGAAGGACCAAATGCAGTGTGGACTCTTTCTGGATGTTGTAGTCTGATAGAGT 1211528
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| | ||| ||||||||||| |||||||| ||||||||||| || || || || || ||
Sbjct 1211527 GCGGCCATCCTCAAGTTGCTTACCAGCAAAGATAAGACGTTGCTGGTCCGGTGGGATACC 1211468
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729
||||| ||||| |||||| ||| || || || ||||| | | | || | |||
Sbjct 1211467 CTCCTTATCTTGGATCTTTGATTTCACGTTGTCGATGGTATCTGACGACTCAACCTCCAA 1211408
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
|| || || || ||||| || ||||| ||||| |||||
Sbjct 1211407 -TGTGATTGTCTTTCCGGTAAGTGTCTTGACGAAGATTTG 1211369
Score = 93.3 bits (102), Expect = 3e-13
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677
|| || ||||||||||| || || || | ||||||||| || || |||||||| ||||||
Sbjct 15669 TCCTCGAGTTGCTTTCCGGCGAAGATCAAACGTTGTTGGTCCGGGGGAATTCCCTCCTTG 15610
Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737
|| || ||||| |||||| ||||||||||||| | |||||||| ||
Sbjct 15609 TCCTGGATCTTGGACTTGACATTGTCAATAGTATCAGAGGACTCGACCTCAAGGGTGATG 15550
Query 480738 GTTTTACCGGTGAGAGTCTTAACGAA 480763
|| || || || || ||||| |||||
Sbjct 15549 GTCTTTCCCGTAAGGGTCTTGACGAA 15524
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268168176023036
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