Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12- 14] 257 sequences; 43,359,131 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq89 127 2e-23 seq67 111 2e-18 seq254 102 1e-15 seq182 91.5 2e-12 >seq89 Length=741344 Score = 127 bits (140), Expect = 2e-23 Identities = 128/164 (78%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 1592131 GTGGGACAAGGAGTTT-TGCGACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCG 1592189 ||||||| | |||| ||| | ||||| ||| | ||||||||| | || || || | Sbjct 451185 GTGGGACCAAAGGTTTATGCAA-GTCGATCAGGATATGCTCTTTGAGCTTATTCTGGCTG 451127 Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 | ||||||||| |||||||| |||| ||||||||||| |||||| |||| ||||| |||| Sbjct 451126 CTAACTACCTCAACATCAAGGCTCTTCTCGATCTTGGCTGCAAGACTGTTGCCAATATGA 451067 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATC 1592293 |||| |||||| | || | || ||||| ||||| || |||||| Sbjct 451066 TCAAAGGCAAGACTCCAAAAGAAATCCGAAAGACATTCAACATC 451023 >seq67 Length=682007 Score = 111 bits (122), Expect = 2e-18 Identities = 90/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || |||||||||||||| ||||| |||| ||||| | || |||||| | || ||||| Sbjct 384245 GCTGCCAACTACCTCGATATCAAAGCTCTCCTCGACGTCGGCTGCAAGACCGTCGCCAAT 384186 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||||||||||||||| || || || ||||| ||||| |||||||||| Sbjct 384185 ATGATCAAGGGCAAGTCCCCAGAAGAAATCCGAAAGACATTTAACATCA 384137 >seq254 Length=31746 Score = 102 bits (112), Expect = 1e-15 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || |||||||||||||| |||||| |||| ||||| | || |||||| |||| ||||| Sbjct 1881 GCTGCCAACTACCTCGATATCAAGGCTCTCCTCGACATCGGATGCAAGACTGTTGCCAAT 1940 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294 ||||| ||||| ||| | || || || ||||| ||||| || ||||||| Sbjct 1941 ATGATTAAGGGTAAGACCCCAGAAGAAATCCGAAAGACATTCAACATCA 1989 >seq182 Length=792865 Score = 91.5 bits (100), Expect = 2e-12 Identities = 167/243 (69%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || | | |||||| ||||| |||||||| | || ||||| Sbjct 655201 GCCTTCTGGTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGCTAGGGAGATG 655142 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCC--GAGCGACG 868808 |||||| | ||| ||||||| | |||||| ||| ||| || ||||||| Sbjct 655141 TTCTCCATGAAGTCGAATGGGTTGGCAGACTTGTACACCTTCTCGTTACCAAGAGCGACT 655082 Query 868809 CGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGA 868868 || || || ||||| || ||||||||||| || ||| | | ||||||||||| | Sbjct 655081 AGA--AGACGATCGGCAACGAACTCGATGTATTGCTTCATCAAGTTCGCGTTCATGCCAA 655024 Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928 || || || || | |||| ||| || |||| |||||||| || ||||| || Sbjct 655023 GAAGTGCACAAGGAAGAGCCTCGGTCAAGAATTCTTGTTCGATCTCAACAGCCTCTGTGA 654964 Query 868929 TGA 868931 ||| Sbjct 654963 TGA 654961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107118109376469