Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12-
14] 257 sequences; 43,359,131 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq247 138 9e-28
seq112 138 9e-28
>seq247
Length=916335
Score = 138 bits (152), Expect = 9e-28
Identities = 145/191 (76%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631
|| |||||||| ||||| |||||||||||||| ||||| || || | ||||||| |
Sbjct 302837 CGGAGCACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCA 302896
Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691
|| ||||||||||| ||||| | ||||| | ||| |||||||| ||||||||||| |||
Sbjct 302897 TCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATACCCTCCTTG 302956
Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751
|| || | || |||||| | || | ||||| || || || |||||||| ||
Sbjct 302957 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCGACCTCAAGAGTGATG 303016
Query 29752 GTTTTGCCAGT 29762
|| ||||||||
Sbjct 303017 GTCTTGCCAGT 303027
>seq112
Length=1448063
Score = 138 bits (152), Expect = 9e-28
Identities = 145/191 (76%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631
|| |||||||| ||||| |||||||||||||| ||||| || || | ||||||| |
Sbjct 1211352 CGGAGCACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGACCA 1211293
Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691
|| ||||||||||| ||||| | ||||| | ||| |||||||| ||||||||||| |||
Sbjct 1211292 TCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATACCCTCCTTG 1211233
Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751
|| || | || |||||| | || | ||||| || || || |||||||| ||
Sbjct 1211232 TCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCGACCTCAAGAGTGATG 1211173
Query 29752 GTTTTGCCAGT 29762
|| ||||||||
Sbjct 1211172 GTCTTGCCAGT 1211162
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385217993421237
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |