Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12-
14] 257 sequences; 43,359,131 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq247 206 2e-47
seq112 206 2e-47
seq202 87.8 1e-11
seq181 87.8 1e-11
>seq247
Length=916335
Score = 206 bits (228), Expect = 2e-47
Identities = 898/1402 (64%), Gaps = 19/1402 (1%)
Strand=Plus/Minus
Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485
|||| ||||| | ||||| |||||||| | ||| || ||||| || ||||| || ||
Sbjct 267663 GCAGAGACATTCATGATACCGTTGGCATCAATATCGAAGGTGACCTCGATTTGTGGAACA 267604
Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545
|| | |||||||||| || || | | || |||| ||| || || || ||
Sbjct 267603 CCACGAGGAGCAGGTGGAATACCAGTGAGTTCGAACTTTCCGAGAAGGTTGTTGTCCTTT 267544
Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 281605
||| ||| ||||||||||| | ||| || || ||| ||| ||||| || |
Sbjct 267543 GTGCGCGTTCTCTCACCCTCGAAGACTTGAATCAAGACACCAGGTTGGTTATCGGAGAAG 267484
Query 281606 GTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTC 281665
|| | || ||| || || || ||||| || ||||| | | ||| | ||||||
Sbjct 267483 GTAGAGAAGACTTCAGACTTCTTGGTGGGAATGGTGGTGTTGCGGTGAATGAGCTTGGTC 267424
Query 281666 ATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATA 281725
|| |||||||| || || | ||||||||| | || | |||||| | || | ||
Sbjct 267423 ATTTGTCCACCAGCAGTCTCGATACCAAGAGACAATGGCGCGACATCGAGAAGAAGGATC 267364
Query 281726 T--TTTGAAGTTTTTCATCA-GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 281782
| || | || || || | || | |||| || ||||| || || | ||||| ||
Sbjct 267363 TCGTTGGTAGACTTGGATGAAGTGTCACCAGAGAGGATAGCAGCCTGGACGGCAGCGCCG 267304
Query 281783 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 281842
||||||||||| |||||||| || | | | ||| | | ||||| ||||| | |
Sbjct 267303 TATGCAACAGCCTCATCAGGGTTGATGGACTTGTTTGGCTCCTTACCGTTGAAGTAGTCG 267244
Query 281843 GAAAGAAGTTGTCT---TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCA 281899
| | || | ||| ||| | || ||||| | || || || || || || || ||
Sbjct 267243 GTGATGAGCT-TCTGGATACGT--GGGATACGGGTGGAACCACCGACCAAGACGATCTCG 267187
Query 281900 TGCAC-CTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC-GGGTTCAAGAC 281957
|| || ||| ||||| || | || | || | || || || ||||| |
Sbjct 267186 TGGACTCTG-GATTTGTCGATCTTGGCGTCAGCGAGGACACGGTCGACTGGGTTGGTGGT 267128
Query 281958 CAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTAT 282017
| || || | |||| |||||||| ||||| ||| | ||| | || | |
Sbjct 267127 G-GATCGGAAGAGGTCTTGGCAAAGTTCCTCGAAACGAGCACGAGTGATAGAGGTGTAGA 267069
Query 282018 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 282077
| || || || ||||| | ||| || | ||| || | || || | || || || || |
Sbjct 267068 AGTCGATACCCTCGAAGAGAGAGTCGATTTCGATGGATGTCTGGGCAGAGGAGGAGAGGG 267009
Query 282078 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGC-TGATTGATTC 282136
||| ||||||||||| ||||| || | || | || | || || | | || ||
Sbjct 267008 TACGCTTAGCACGTTCGCATGCAGTGCGGAGACGACGAAGAGCACGAGCGTTAGTGCTT- 266950
Query 282137 AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCA 282196
|||||| | || | || | |||||| || | || | | || ||||| || ||
Sbjct 266949 AAATCTTTCTTGTGCTTGCGCTTGAACTCGTTTACGAAGTGGTTAACGAGACGGTTGTCG 266890
Query 282197 AAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCT 282256
|| || ||||| ||||| | ||| | || | || | | |||| || | || ||
Sbjct 266889 AAGTCCTCACCACCCAAGTGAGTGTCACCGGCGGTGGACTTGACTTCAAAGATACCCTCC 266830
Query 282257 TCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTC 282316
|||| | ||| |||| |||||| |||||| ||||| | ||| || || || || ||
Sbjct 266829 TCAATGGTCAAGAGAGAAACATCGAAGGTTCCTCCACCAAGATCGAAGATGAGAACGTTT 266770
Query 282317 ATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTA 282376
|| || || || || | ||| || |||| ||||| ||||| || || ||
Sbjct 266769 CGCTCACCCTCAACCTTCTTGTCCAAACCGTAAGCAATGGCAGCTGCAGTAGGCTCGTTG 266710
Query 282377 ATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGT 282436
|| || | | |||||| ||||| || || ||||||||||| |||||||| | |||
Sbjct 266709 ATGATACGGAGAACATTGAGACCGGCGATGAGACCTGCATCTTTTGTGGCTTGACGTTGG 266650
Query 282437 GAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTT-ACTTCTTTTCCAATATA 282495
|| ||| | || ||||| |||||||| | || || | |||| || | || | ||
Sbjct 266649 GAGTCGGTGAAGTATGCTGGAACAGTGACGACAGCGT-TGTTGACGGTTCCACCGAGGTA 266591
Query 282496 AGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATA 282555
|| || || | |||| || || | ||| || || |||| ||| || | |
Sbjct 266590 GGCCTCAGCAGTCTCCCTCATCTTGACCAAGACCATCGAGGAGATTTCTTCGGGTGTGAA 266531
Query 282556 TTGCTTGGATTC-ATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAA 282614
|||||| | || |||| | ||||||| ||| || ||| | || |
Sbjct 266530 TTGCTTAGCCTCGCCCTTGA-ACTCGACTTCAATGACTGGCTTTCCGCCACGGTCGATGA 266472
Query 282615 CTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAA 282674
| || ||||| | | |||||||| | ||| || | |||| || | | ||| |
Sbjct 266471 CCTTGAATGGGAAGTGCTTCATATCAGCTTGGACTTCTGGGTCGGCGAATTTACGACCGA 266412
Query 282675 TTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTG 282734
| | || || ||||| || | || || || || || | || |||| | || || |
Sbjct 266411 TCAGACGCTTAGCATCGAAGACTGTGTTTGTAGGGTTCATGGCGACTTGGTTCTTTGCGG 266352
Query 282735 CATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTAC 282794
||||||| |||||| |||| || ||||| || | ||| | || |||||||| || || |
Sbjct 266351 CATCTCCGATCAGACGTTCGGTGTCTGTGAAAGCAACGAACGAAGGAGTTGTTCGGTTTC 266292
Query 282795 CTTGATCATTCGCAATAATTTC 282816
|||| || || || ||||||||
Sbjct 266291 CTTGGTCGTTGGCGATAATTTC 266270
>seq112
Length=1448063
Score = 206 bits (228), Expect = 2e-47
Identities = 898/1402 (64%), Gaps = 19/1402 (1%)
Strand=Plus/Plus
Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485
|||| ||||| | ||||| |||||||| | ||| || ||||| || ||||| || ||
Sbjct 1246526 GCAGAGACATTCATGATACCGTTGGCATCAATATCGAAGGTGACCTCGATTTGTGGAACA 1246585
Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545
|| | |||||||||| || || | | || |||| ||| || || || ||
Sbjct 1246586 CCACGAGGAGCAGGTGGAATACCAGTGAGTTCGAACTTTCCGAGAAGGTTGTTGTCCTTT 1246645
Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 281605
||| ||| ||||||||||| | ||| || || ||| ||| ||||| || |
Sbjct 1246646 GTGCGCGTTCTCTCACCCTCGAAGACTTGAATCAAGACACCAGGTTGGTTATCGGAGAAG 1246705
Query 281606 GTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTC 281665
|| | || ||| || || || ||||| || ||||| | | ||| | ||||||
Sbjct 1246706 GTAGAGAAGACTTCAGACTTCTTGGTGGGAATGGTGGTGTTGCGGTGAATGAGCTTGGTC 1246765
Query 281666 ATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATA 281725
|| |||||||| || || | ||||||||| | || | |||||| | || | ||
Sbjct 1246766 ATTTGTCCACCAGCAGTCTCGATACCAAGAGACAATGGCGCGACATCGAGAAGAAGGATC 1246825
Query 281726 T--TTTGAAGTTTTTCATCA-GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 281782
| || | || || || | || | |||| || ||||| || || | ||||| ||
Sbjct 1246826 TCGTTGGTAGACTTGGATGAAGTGTCACCAGAGAGGATAGCAGCCTGGACGGCAGCGCCG 1246885
Query 281783 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 281842
||||||||||| |||||||| || | | | ||| | | ||||| ||||| | |
Sbjct 1246886 TATGCAACAGCCTCATCAGGGTTGATGGACTTGTTTGGCTCCTTACCGTTGAAGTAGTCG 1246945
Query 281843 GAAAGAAGTTGTCT---TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCA 281899
| | || | ||| ||| | || ||||| | || || || || || || || ||
Sbjct 1246946 GTGATGAGCT-TCTGGATACGT--GGGATACGGGTGGAACCACCGACCAAGACGATCTCG 1247002
Query 281900 TGCAC-CTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC-GGGTTCAAGAC 281957
|| || ||| ||||| || | || | || | || || || ||||| |
Sbjct 1247003 TGGACTCTG-GATTTGTCGATCTTGGCGTCAGCGAGGACACGGTCGACTGGGTTGGTGGT 1247061
Query 281958 CAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTAT 282017
| || || | |||| |||||||| ||||| ||| | ||| | || | |
Sbjct 1247062 G-GATCGGAAGAGGTCTTGGCAAAGTTCCTCGAAACGAGCACGAGTGATAGAGGTGTAGA 1247120
Query 282018 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 282077
| || || || ||||| | ||| || | ||| || | || || | || || || || |
Sbjct 1247121 AGTCGATACCCTCGAAGAGAGAGTCGATTTCGATGGATGTCTGGGCAGAGGAGGAGAGGG 1247180
Query 282078 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGC-TGATTGATTC 282136
||| ||||||||||| ||||| || | || | || | || || | | || ||
Sbjct 1247181 TACGCTTAGCACGTTCGCATGCAGTGCGGAGACGACGAAGAGCACGAGCGTTAGTGCTT- 1247239
Query 282137 AAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCA 282196
|||||| | || | || | |||||| || | || | | || ||||| || ||
Sbjct 1247240 AAATCTTTCTTGTGCTTGCGCTTGAACTCGTTTACGAAGTGGTTAACGAGACGGTTGTCG 1247299
Query 282197 AAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCT 282256
|| || ||||| ||||| | ||| | || | || | | |||| || | || ||
Sbjct 1247300 AAGTCCTCACCACCCAAGTGAGTGTCACCGGCGGTGGACTTGACTTCAAAGATACCCTCC 1247359
Query 282257 TCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTC 282316
|||| | ||| |||| |||||| |||||| ||||| | ||| || || || || ||
Sbjct 1247360 TCAATGGTCAAGAGAGAAACATCGAAGGTTCCTCCACCAAGATCGAAGATGAGAACGTTT 1247419
Query 282317 ATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTA 282376
|| || || || || | ||| || |||| ||||| ||||| || || ||
Sbjct 1247420 CGCTCACCCTCAACCTTCTTGTCCAAACCGTAAGCAATGGCAGCTGCAGTAGGCTCGTTG 1247479
Query 282377 ATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGT 282436
|| || | | |||||| ||||| || || ||||||||||| |||||||| | |||
Sbjct 1247480 ATGATACGGAGAACATTGAGACCGGCGATGAGACCTGCATCTTTTGTGGCTTGACGTTGG 1247539
Query 282437 GAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTT-ACTTCTTTTCCAATATA 282495
|| ||| | || ||||| |||||||| | || || | |||| || | || | ||
Sbjct 1247540 GAGTCGGTGAAGTATGCTGGAACAGTGACGACAGCGT-TGTTGACGGTTCCACCGAGGTA 1247598
Query 282496 AGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATA 282555
|| || || | |||| || || | ||| || || |||| ||| || | |
Sbjct 1247599 GGCCTCAGCAGTCTCCCTCATCTTGACCAAGACCATCGAGGAGATTTCTTCGGGTGTGAA 1247658
Query 282556 TTGCTTGGATTC-ATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAA 282614
|||||| | || |||| | ||||||| ||| || ||| | || |
Sbjct 1247659 TTGCTTAGCCTCGCCCTTGA-ACTCGACTTCAATGACTGGCTTTCCGCCACGGTCGATGA 1247717
Query 282615 CTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAA 282674
| || ||||| | | |||||||| | ||| || | |||| || | | ||| |
Sbjct 1247718 CCTTGAATGGGAAGTGCTTCATATCAGCTTGGACTTCTGGGTCGGCGAATTTACGACCGA 1247777
Query 282675 TTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTG 282734
| | || || ||||| || | || || || || || | || |||| | || || |
Sbjct 1247778 TCAGACGCTTAGCATCGAAGACTGTGTTTGTAGGGTTCATGGCGACTTGGTTCTTTGCGG 1247837
Query 282735 CATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTAC 282794
||||||| |||||| |||| || ||||| || | ||| | || |||||||| || || |
Sbjct 1247838 CATCTCCGATCAGACGTTCGGTGTCTGTGAAAGCAACGAACGAAGGAGTTGTTCGGTTTC 1247897
Query 282795 CTTGATCATTCGCAATAATTTC 282816
|||| || || || ||||||||
Sbjct 1247898 CTTGGTCGTTGGCGATAATTTC 1247919
>seq202
Length=271491
Score = 87.8 bits (96), Expect = 1e-11
Identities = 138/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 282688 ATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAG 282747
|||||| || || || |||| || | ||||| || | |||||||||||||| | ||
Sbjct 56936 ATCAAAGATGGTGTTCTTTGGGTTTGCCGCAGCCTGGTTCTTGGCTGCATCTCCGACCAA 56877
Query 282748 ATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGC 282807
| |||| || || || | |||||||| ||||| | || | ||||| || || |
Sbjct 56876 ACGTTCCTCATCGGTGAAGGCGACATATGAAGGAGTAATACGGTGTCCTTGGTCGTTTAC 56817
Query 282808 AATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATC 282867
| ||| |||||||| || |||||| ||||| || ||| | || ||||| | |||
Sbjct 56816 CAGAATCTCAACTTTTCCCTTTTGCATCACACCGACGCAAGAGTATGTGGTTCCAAGATC 56757
Query 282868 AATACCAATAGCAATTTT 282885
||||| || | |||||
Sbjct 56756 GATACCGATGACTATTTT 56739
>seq181
Length=1902219
Score = 87.8 bits (96), Expect = 1e-11
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 435132 TGAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAAC 435191
|||||| |||||||| | |||||||||||||||||| | || |||| || | || ||
Sbjct 874232 TGAATTCTTCTTCCACGCCATGGCTGGTCGTGAAGGTTTGATCGATACTGCAGTCAAGAC 874173
Query 435192 TGCTGATACTGGTTATATTCAAAGAAAACTTGTCAAGATGCTTGAAGATATTAAACAAGA 435251
|| || |||||||| |||||| | |||||||| ||||||||| | | |
Sbjct 874172 CGCAGAAACTGGTTACATTCAACGTCGTCTTGTCAAAGCTCTTGAAGATGTCATGGCGAA 874113
Query 435252 ATATGATGGTACAGTGAGAAA 435272
|||||| |||||||| ||||
Sbjct 874112 ATATGACGGTACAGTCCGAAA 874092
Score = 87.8 bits (96), Expect = 1e-11
Identities = 120/168 (71%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 432288 GGTAAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACGT 432347
|| || |||||||| | | ||||| ||||||||||||||||| ||| | ||||| |||
Sbjct 875674 GGAAAGGAAGGTCGGCTGCGTGGAAACTTGATGGGAAAGCGTGTGGATTTCTCTGCTCGT 875615
Query 432348 ACAGTTATTACTTCTGATCCTAATATTGCTCTCAATGAAGTTGGTGTTCCTCTCATTATT 432407
|| ||||||||| ||||||||| | | ||| | || || ||||| || | | |||
Sbjct 875614 ACCGTTATTACTGGTGATCCTAACTTATCGCTCGACGAGGTCGGTGTGCCCCGAAGTATC 875555
Query 432408 GCGAAAAATCTTACTTTTGACGAAATTGTAACAGAACATAATATTGAT 432455
|| | || || || | ||||| ||||| || ||||| |||
Sbjct 875554 GCCAGAATCCTGACATACCCCGAAACCGTAACTCCACTCAATATCGAT 875507
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740617782386082
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |