Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12- 14] 257 sequences; 43,359,131 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq247 107 1e-18 seq112 107 1e-18 seq89 102 5e-17 >seq247 Length=916335 Score = 107 bits (118), Expect = 1e-18 Identities = 156/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| | |||||| || | ||||||||| || || ||||||||||| || || || | | Sbjct 302380 ACGAAGCACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCC 302439 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || ||||| || ||||| ||||| ||||| ||||| || || | || | ||| || || Sbjct 302440 ATCCTCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTT 302499 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| ||| || || | |||| ||| | ||| || |||||||| || | || | Sbjct 302500 GTCTTGAATCTT-TGACTTGACATTGTCAATGGTATCTGACGATTCCACTTCCAATGTAA 302558 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || || || || || || || |||||||||||| Sbjct 302559 TGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCATA 302596 >seq112 Length=1448063 Score = 107 bits (118), Expect = 1e-18 Identities = 156/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| | |||||| || | ||||||||| || || ||||||||||| || || || | | Sbjct 1211809 ACGAAGCACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCC 1211750 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || ||||| || ||||| ||||| ||||| ||||| || || | || | ||| || || Sbjct 1211749 ATCCTCCAACTGCTTTCCAGCAAAGATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTT 1211690 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| ||| || || | |||| ||| | ||| || |||||||| || | || | Sbjct 1211689 GTCTTGAATCTT-TGACTTGACATTGTCAATGGTATCTGACGATTCCACTTCCAATGTAA 1211631 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || || || || || || || |||||||||||| Sbjct 1211630 TGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCATA 1211593 >seq89 Length=741344 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||||| || |||||| || ||||| |||||||| ||||| Sbjct 321518 CCACCACGTAGACGAAGGACCAAGTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAA 321577 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| | || || | ||| || ||||| || |||| ||| |||||||| | || Sbjct 321578 AGGGTGCGTCCATCTTCGAGTTGCTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGG 321637 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || || | ||| ||| | ||| || ||||| || Sbjct 321638 ATTCCCTCCTTGTCCTGGATCTTGGACTTGA-CATTGTCGATGGTATCAGAGGATTCAAC 321696 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| |||||||| || | ||||| || ||||||||||| Sbjct 321697 CTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 321744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328702970437440