Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12- 14] 257 sequences; 43,359,131 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq247 93.3 1e-13 seq112 93.3 1e-13 seq89 93.3 1e-13 seq236 84.2 5e-11 >seq247 Length=916335 Score = 93.3 bits (102), Expect = 1e-13 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || ||||| || || || |||||||||||| || || Sbjct 302592 CAGATCTTCGTCAAGACTTTGACTGGAAAGACCATTACATTGGAAGTGGAATCGTCAGAT 302533 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||||||||| || || || || |||||| || Sbjct 302532 ACCATTGACAATGTCAAGTCAAAGATTCAAGACAAGGAGGGTATCCCACCGGACCAACAG 302473 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | ||||| || |||||||||||||| ||||| || ||| | | ||||||||| | Sbjct 302472 CGATTGATCTTTGCTGGAAAGCAGTTGGAGGATGGCAGAACTCTTTCTGATTACAACATT 302413 Query 206353 CAGAAAGAG 206361 ||||| ||| Sbjct 302412 CAGAAGGAG 302404 >seq112 Length=1448063 Score = 93.3 bits (102), Expect = 1e-13 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || | || ||||| || || || |||||||||||| || || Sbjct 1211597 CAGATCTTCGTCAAGACTTTGACTGGAAAGACCATTACATTGGAAGTGGAATCGTCAGAT 1211656 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||||||||| || || || || |||||| || Sbjct 1211657 ACCATTGACAATGTCAAGTCAAAGATTCAAGACAAGGAGGGTATCCCACCGGACCAACAG 1211716 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | ||||| || |||||||||||||| ||||| || ||| | | ||||||||| | Sbjct 1211717 CGATTGATCTTTGCTGGAAAGCAGTTGGAGGATGGCAGAACTCTTTCTGATTACAACATT 1211776 Query 206353 CAGAAAGAG 206361 ||||| ||| Sbjct 1211777 CAGAAGGAG 1211785 >seq89 Length=741344 Score = 93.3 bits (102), Expect = 1e-13 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || |||||| ||||| || ||||| ||||| | || || ||| ||||| Sbjct 321741 CAGATCTTCGTCAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTCTGAT 321682 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || ||||| || || ||| Sbjct 321681 ACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCAGCAA 321622 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| ||||| | ||||||||| | || | |||| |||||| || Sbjct 321621 CGTCTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAACATC 321562 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 || || || || ||||||||| Sbjct 321561 CAAAAGGAATCCACTCTTCAC 321541 >seq236 Length=650478 Score = 84.2 bits (92), Expect = 5e-11 Identities = 185/276 (67%), Gaps = 6/276 (2%) Strand=Plus/Plus Query 173079 GTGCTTTTGGTTA---TTTTTGCGGCATATGGCGTCCTTGTAGACGATGAAGGGCATACC 173135 || ||||||||| || ||| |||| || |||||||| | ||||| || | || Sbjct 519181 GTTCTTTTGGTTGCTCTTCTTGTTGCAT---GCATCCTTGTAAAGCATGAATGGATTTCC 519237 Query 173136 AACCTCCGCTTGAGCCACCAAAATGTGGTGCCAAAGTTCTTGGGCTTTTACGGTAGTTCT 173195 ||| | ||||||| | | |||| || |||||| | ||||||||| | ||| | | Sbjct 519238 GGTCTCAGTTTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGATGGTCTTGCG 519297 Query 173196 CGCTCTTCCTTCTTTTTCGTATCTCTCATAGAGGTCTTCGAAATCCTTCCCGTAAATTTC 173255 |||| ||||| || || || ||||||||||| |||| || || | || || | || Sbjct 519298 ACCTCTACCTTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATC 519357 Query 173256 GTCAAGACCGGGAGCTTCCTTCGGACAAAAGAGACTCCAATTTCCATCGGTCTCGACCCT 173315 | | || ||| ||| || || || | || |||||| | | | || || | Sbjct 519358 AGCCAACCCAGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACG 519417 Query 173316 CTTCATGAAGAGGTCGGAAGTCCAAATCGCGTAGAA 173351 |||||||||||| || | | |||| | || ||||| Sbjct 519418 CTTCATGAAGAGATCCGGAATCCACAAGGCATAGAA 519453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181816908485697