Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12- 14] 257 sequences; 43,359,131 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq247 86.0 6e-12 seq112 86.0 6e-12 seq89 86.0 6e-12 >seq247 Length=916335 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327 || || |||||||| || || ||||| ||| | | || | || || |||||||||||| Sbjct 302958 GACAAGGAGGGTATTCCTCCGGATCAACAACGTTTGATCTTCGCTGGTAAACAACTCGAA 302899 Query 25328 GATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTG 25384 |||| | | | | ||||| ||||| || ||||||||||||||| |||| || ||| Sbjct 302898 GATGGTCGCACCCTGAGCGACTACAACATCCAAAAAGAATCCACCCTTCACTTGGTG 302842 >seq112 Length=1448063 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327 || || |||||||| || || ||||| ||| | | || | || || |||||||||||| Sbjct 1211231 GACAAGGAGGGTATTCCTCCGGATCAACAACGTTTGATCTTCGCTGGTAAACAACTCGAA 1211290 Query 25328 GATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTG 25384 |||| | | | | ||||| ||||| || ||||||||||||||| |||| || ||| Sbjct 1211291 GATGGTCGCACCCTGAGCGACTACAACATCCAAAAAGAATCCACCCTTCACTTGGTG 1211347 >seq89 Length=741344 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | || || ||||| | || || ||| | ||||| |||| || ||| || Sbjct 321745 CATGCAGATCTTCGTCAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTC 321686 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||||| ||||| | || || || || || || ||||| || || || ||||| Sbjct 321685 TGATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCA 321626 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||| | || || | || |||||| ||||||||||||| | | | ||| ||||| Sbjct 321625 GCAACGTCTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAA 321566 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGT 25383 || ||||| |||||||| |||| || || Sbjct 321565 CATCCAAAAGGAATCCACTCTTCACTTGGT 321536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445092970134240