Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12-
14] 257 sequences; 43,359,131 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq247 86.0 6e-12
seq112 86.0 6e-12
seq89 86.0 6e-12
>seq247
Length=916335
Score = 86.0 bits (94), Expect = 6e-12
Identities = 89/117 (76%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327
|| || |||||||| || || ||||| ||| | | || | || || ||||||||||||
Sbjct 302958 GACAAGGAGGGTATTCCTCCGGATCAACAACGTTTGATCTTCGCTGGTAAACAACTCGAA 302899
Query 25328 GATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTG 25384
|||| | | | | ||||| ||||| || ||||||||||||||| |||| || |||
Sbjct 302898 GATGGTCGCACCCTGAGCGACTACAACATCCAAAAAGAATCCACCCTTCACTTGGTG 302842
>seq112
Length=1448063
Score = 86.0 bits (94), Expect = 6e-12
Identities = 89/117 (76%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 25268 GATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAA 25327
|| || |||||||| || || ||||| ||| | | || | || || ||||||||||||
Sbjct 1211231 GACAAGGAGGGTATTCCTCCGGATCAACAACGTTTGATCTTCGCTGGTAAACAACTCGAA 1211290
Query 25328 GATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTG 25384
|||| | | | | ||||| ||||| || ||||||||||||||| |||| || |||
Sbjct 1211291 GATGGTCGCACCCTGAGCGACTACAACATCCAAAAAGAATCCACCCTTCACTTGGTG 1211347
>seq89
Length=741344
Score = 86.0 bits (94), Expect = 6e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233
|||||| | || || ||||| | || || ||| | ||||| |||| || ||| ||
Sbjct 321745 CATGCAGATCTTCGTCAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTTGAATCCTC 321686
Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293
||||| ||||| | || || || || || || ||||| || || || |||||
Sbjct 321685 TGATACCATCGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCACCTGATCA 321626
Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353
|||| | || || | || |||||| ||||||||||||| | | | ||| |||||
Sbjct 321625 GCAACGTCTGATCTTCGCCGGCAAGCAACTCGAAGATGGACGCACCCTTTCCGACTACAA 321566
Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGT 25383
|| ||||| |||||||| |||| || ||
Sbjct 321565 CATCCAAAAGGAATCCACTCTTCACTTGGT 321536
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445092970134240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |