Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12- 14] 257 sequences; 43,359,131 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq89 129 6e-25 seq247 123 3e-23 seq112 123 3e-23 >seq89 Length=741344 Score = 129 bits (142), Expect = 6e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || |||||||||||||| |||||||||||| || |||| | || ||||| || Sbjct 321541 GTGAAGAGTGGATTCCTTTTGGATGTTGTAGTCGGAAAGGGTGCGTCCATCTTCGAGTTG 321600 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||||| || || |||| ||| |||||||| || || || || || || || || || || Sbjct 321601 CTTGCCGGCGAAGATCAGACGTTGCTGATCAGGTGGGATTCCCTCCTTGTCCTGGATCTT 321660 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||||| ||| | || || || ||||| || ||||| || ||||||||||| || Sbjct 321661 GGACTTGACATTGTCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTTTTACCCGT 321720 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 | ||||| ||||| || ||||| Sbjct 321721 GAGGGTTTTGACGAAGATCTGCAT 321744 >seq247 Length=916335 Score = 123 bits (136), Expect = 3e-23 Identities = 152/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| | ||| || |||||||| ||||| ||||||||||||| | |||| || Sbjct 302834 AGGCGGAGCACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGA 302893 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || ||||| ||||| || || || |||||||| || ||||| || || || || || Sbjct 302894 CCATCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATACCCTCC 302953 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| ||| | ||||||||||| || || || ||||| Sbjct 302954 TTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCGACCTCAAGAGTG 303013 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGA 134703 ||||| || || || | ||| || |||| Sbjct 303014 ATGGTCTTGCCAGTGAGAGTCTTGACGA 303041 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 134523 TCCTTTTGAATGTTGTAGTCGCCAACGGTG-TGAGAGTCGTCGAGCTGTTTGCCTGCAAA 134581 ||||| ||||||||||| || || || || | || || | ||| || || ||||| Sbjct 302405 TCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCA-TCCTCCAACTGCTTTCCAGCAAA 302463 Query 134582 AATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGC 134641 ||||| ||||| || || || || || || || || |||||||| ||| ||||| Sbjct 302464 GATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTGAATCTTTGACTTGACATT 302523 Query 134642 GTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAAC 134701 ||| | || || ||||||||||| || | |||||||| || || || ||||| || || Sbjct 302524 GTCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTCTTTCCAGTCAAAGTCTTGAC 302583 Query 134702 GAAAATTTGCAT 134713 ||| || ||||| Sbjct 302584 GAAGATCTGCAT 302595 Score = 95.1 bits (104), Expect = 1e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 ||||| || || || || |||||||||||||||||||||| | ||| | || || Sbjct 303123 ACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTCAAGGTACGGCCATCTTCA 303182 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 || ||||||||||| || ||||| ||||| || || || || || || || || || ||| Sbjct 303183 AGTTGTTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATCCTGA 303242 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || || || ||| | || ||| || || || ||||| || ||||| || Sbjct 303243 ATCTTGCTCTTTACGTTGTCGATGGTATCGCTGGACTCGACCTCGAGGGTGATGGTCTTG 303302 Query 134685 CCGGT 134689 ||||| Sbjct 303303 CCGGT 303307 >seq112 Length=1448063 Score = 123 bits (136), Expect = 3e-23 Identities = 152/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| | ||| || |||||||| ||||| ||||||||||||| | |||| || Sbjct 1211355 AGGCGGAGCACCAAGTGAAGGGTGGATTCTTTTTGGATGTTGTAGTCGCTCAGGGTGCGA 1211296 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || ||||| ||||| || || || |||||||| || ||||| || || || || || Sbjct 1211295 CCATCTTCGAGTTGTTTACCAGCGAAGATCAAACGTTGTTGATCCGGAGGAATACCCTCC 1211236 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || ||||| ||| | ||||||||||| || || || ||||| Sbjct 1211235 TTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCGACCTCAAGAGTG 1211176 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGA 134703 ||||| || || || | ||| || |||| Sbjct 1211175 ATGGTCTTGCCAGTGAGAGTCTTGACGA 1211148 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 134523 TCCTTTTGAATGTTGTAGTCGCCAACGGTG-TGAGAGTCGTCGAGCTGTTTGCCTGCAAA 134581 ||||| ||||||||||| || || || || | || || | ||| || || ||||| Sbjct 1211784 TCCTTCTGAATGTTGTAATCAGAAAGAGTTCTGCCA-TCCTCCAACTGCTTTCCAGCAAA 1211726 Query 134582 AATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGC 134641 ||||| ||||| || || || || || || || || |||||||| ||| ||||| Sbjct 1211725 GATCAATCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCTTGAATCTTTGACTTGACATT 1211666 Query 134642 GTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAAC 134701 ||| | || || ||||||||||| || | |||||||| || || || ||||| || || Sbjct 1211665 GTCAATGGTATCTGACGATTCCACTTCCAATGTAATGGTCTTTCCAGTCAAAGTCTTGAC 1211606 Query 134702 GAAAATTTGCAT 134713 ||| || ||||| Sbjct 1211605 GAAGATCTGCAT 1211594 Score = 95.1 bits (104), Expect = 1e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 ||||| || || || || |||||||||||||||||||||| | ||| | || || Sbjct 1211066 ACGAGATGGAGAGTAGACTCCTTTTGAATGTTGTAGTCGCTCAAGGTACGGCCATCTTCA 1211007 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 || ||||||||||| || ||||| ||||| || || || || || || || || || ||| Sbjct 1211006 AGTTGTTTGCCTGCGAAGATCAAGCGCTGTTGGTCCGGGGGAATTCCCTCCTTATCCTGA 1210947 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || || || ||| | || ||| || || || ||||| || ||||| || Sbjct 1210946 ATCTTGCTCTTTACGTTGTCGATGGTATCGCTGGACTCGACCTCGAGGGTGATGGTCTTG 1210887 Query 134685 CCGGT 134689 ||||| Sbjct 1210886 CCGGT 1210882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505396776407640