Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12- 14] 257 sequences; 43,359,131 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq236 277 2e-69 seq182 109 8e-19 >seq236 Length=650478 Score = 277 bits (306), Expect = 2e-69 Identities = 1146/1779 (64%), Gaps = 39/1779 (2%) Strand=Plus/Plus Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433 || |||||||| |||| |||||||| | ||||| || |||||||| ||||| || ||| Sbjct 518183 GTGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGA 518242 Query 68434 CCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATA 68493 || | |||| ||| ||||||||| || | ||| | || || || Sbjct 518243 CCCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATG 518302 Query 68494 TGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATA 68553 ||||| ||||| ||||| || || | || || || | ||| || ||||||| | | Sbjct 518303 TGAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCATTTGAACA 518362 Query 68554 ATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAGG 68613 || | ||||| ||| ||||| | ||||| ||| ||||| ||| |||||| | Sbjct 518363 ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAATG 518422 Query 68614 CTCGTA---TTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATTC 68670 | | | |||||||| || |||||||| | || || ||||| || | || | Sbjct 518423 TTGGGAATGTTTTGAATAGAACCACCATCAGCGATGATACGGTTCTTCATGTTGTCTGAC 518482 Query 68671 CACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCA 68730 || ||| | || | | | | || || || ||||| | ||| ||||| ||| Sbjct 518483 CATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGTTAACAACTTGGAATTCTCCA 518542 Query 68731 GATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCC 68790 | || || | ||||| ||| || ||| || |||||||| | | || || || Sbjct 518543 GCCAAGACACGACGAGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAAACCG 518602 Query 68791 AGAATTTGAGCAGTTGATG-CAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 68849 |||||||||| || || || | ||||||||||| || || | ||||| || | | ||| Sbjct 518603 AGAATTTGAG-AGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGACACC 518661 Query 68850 ATGTGTTATGATTT-TATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACAT 68908 ||| | |||| | |||| || | | ||| |||||||| || | ||| ||| Sbjct 518662 GTGTTGTTTGATGGATTTCTTCAAGCTATC-CCAGTCCCAAAGGTCGGTAGGTGTAACTC 518720 Query 68909 TCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAG 68968 ||| | ||||||||| || || || || ||| || | || || ||||| | Sbjct 518721 CCCACATATCGTATTGAAGTTCGCCCTTCGAGACAGGTGAGCCTTCGTAGGTCTCATAGG 518780 Query 68969 GTCCTTCCTGTTCAGCTAGTTCACAACTTGCC-TCT-AATGCACCGTAATAAATTGTTTC 69026 || || | ||| | || |||| | | | || ||| ||| ||||| ||||| Sbjct 518781 TACCCAACTCCTTAGCAA--TCTCAACGGACGATGTCAAAGCAGCGTGGTAAATAGTTTC 518838 Query 69027 GAAAATCTTCTTATTGAGAT-CTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGA- 69084 ||| || | | ||||| | |||| ||||| | || ||||| |||| || || Sbjct 518839 GAAGATTTGAATGTTGAGGTGCTTG-GCTTCAGGTGATTCAAATGG-TAATCGAAGAGCC 518896 Query 69085 ATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAA 69144 | ||| ||||| || | || ||||| || | | ||||||||| ||| | ||| | Sbjct 518897 AAAAAAGCATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAATT-GCT 518955 Query 69145 CTTTCAG-CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGAC 69203 ||||| | | ||||| | || || || || || || || || || || | |||| ||| Sbjct 518956 CTTTCTGGCCTCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTTTCTGAC 519015 Query 69204 TACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCATCTATAA----CAA 69259 || |||| | || || | || || | ||||| | ||| || | | || Sbjct 519016 AACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCCCTCATTCATGTCCAC 519075 Query 69260 ACATATTC--AGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATA 69317 | || || || || | || || | ||||| || || |||| | | || Sbjct 519076 AAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGGGGCAGAGTA 519135 Query 69318 TTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACT 69377 || | || ||||| || | ||| | || || || || || | || || || Sbjct 519136 TTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTTTTGGTTGCT 519195 Query 69378 CTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTC 69437 ||| ||||| || || ||||||||||| || || ||| | || || ||| | |||| || Sbjct 519196 CTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGTTTGAGCCTC 519255 Query 69438 GATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACG-CTTC--TCTTT 69494 || ||| || | ||||| || || || ||||||| || || | || || Sbjct 519256 GAGAATGGAGTACCAAAGCTTTTGGGCTTTGAT---GGTCTTGCGACCTCTACCTTCCTT 519312 Query 69495 TTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACA 69554 ||||| ||| || ||| || || || || | |||||| |||| |||||||| Sbjct 519313 CTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAACCCAGGACA 519372 Query 69555 TTCATTTGGACACATCAATGACCACACATCATCATCCTT---AACTCGTTTCATAAATAG 69611 |||||| || ||||| | || ||| ||| | | ||| ||| || ||||| || || Sbjct 519373 TTCATTGGGGCACATTAGTGTCCA---ATCCGCGTTCTTTTCAACACGCTTCATGAAGAG 519429 Query 69612 ATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAt 69670 ||| |||||||| | || ||| || ||||| | || | |||||| || || | Sbjct 519430 ATCCGGAATCCACA-AGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCCGTGGT 519488 Query 69671 tttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCA 69730 | ||| || || || ||||| | || ||| | ||||| || || ||||| | || | Sbjct 519489 TCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGACTGCAA 519548 Query 69731 TGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTC 69790 | || || || || ||||| || || || | |||||| ||||||||||| | |||| Sbjct 519549 ATGCACCAGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATTGAAAACTC 519608 Query 69791 TCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTG 69850 |||||||| | || || || || ||||| || || || | || || || | | Sbjct 519609 GTAGCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATGCACCAGTGG 519668 Query 69851 CGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAAC 69910 | || || | ||| ||||| || ||||| || |||||||||| | |||||| Sbjct 519669 CACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATCATAGCACATG 519728 Query 69911 GTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGC 69970 || | || ||||| ||||| || || ||||| || |||| | || || || || Sbjct 519729 TCTTGAGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCAATGAGGAAGCATG 519788 Query 69971 TAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACC 70030 || | || ||| || || || || | |||||| || ||||| ||||| Sbjct 519789 ATGAAAGCTGTGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGCGTGTGTGAAGT 519848 Query 70031 ATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATGAATT 70089 |||| | || | || ||||| || ||||| || || ||||| ||| | ||||| Sbjct 519849 ATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGTCACCG-TGAATA 519907 Query 70090 CCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCT 70128 || | || |||||||| | ||| ||||| || |||||| Sbjct 519908 CCAACGGCAACACGCATGATCATTTGCTGTGGACGTTCT 519946 >seq182 Length=792865 Score = 109 bits (120), Expect = 8e-19 Identities = 303/459 (66%), Gaps = 12/459 (3%) Strand=Plus/Minus Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372 |||||| || || ||||| |||||||| | |||||||| || || || |||||| | Sbjct 655211 CATAACACCAGCCTTCTGGTAGTCACCAACTCTCTTCTCGAAGAAGTTTGTCTTGCCTGC 655152 Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAt---ttttttttAAA 39429 | || || || |||||||| || || || || | | || || || | ||| Sbjct 655151 TAGGGAGATGTTCTCCATGAAGTCGAATGGGTTGGCAGACTTGTACACCTTCTCGTTA-- 655094 Query 39430 TCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCAT-TTCAC 39488 || | | | | | ||| ||||| || || |||||| ||||||| ||| | Sbjct 655093 -CCAAGAGCGACTAGAAGACGATCGGCAACGAACTCGATGTATTGCTTCATCAAGTTCGC 655035 Query 39489 AATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTA 39548 ||||| || | ||| | || |||||||| || | || |||| |||||| || | Sbjct 655034 G-TTCATGCCAAGAAGTGCACAAGGAAGAGCCTCGGTCAAGAATTCTTGTTCGATCTCAA 654976 Query 39549 CGGCCTCTGTTATTATCGATGTT--ACTACCTCATCACTCGGTGGATGCAATAAATGTTT 39606 | |||||||| || | || || || ||| | || || | ||| || || Sbjct 654975 CAGCCTCTGTGATGAC--ATCTTGGACAGCCTGCTTGCTTGGACGGTGCTTCAAGTGGGA 654918 Query 39607 AAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGA 39666 || | | ||| |||||||| ||| || || ||||| | || | || || || Sbjct 654917 GAAGAGGAGGCACGCGAAGTCGGTATGGAGACCTTCATCACGGGAGATGAGCTCATTGGA 654858 Query 39667 AAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCC 39726 || ||||| |||| ||| | |||||||| |||||||| || || | ||| || ||||| Sbjct 654857 GAAAGTGAGACCAGCCATCAAGCCACGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCC 654798 Query 39727 AGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAG 39765 | ||||||||||| || || || ||||| ||||| || Sbjct 654797 ACTGAAGAAGATGCCCTCAACAGCAGCAAAAGCAACCAG 654759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686906593305480