Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12-
14] 257 sequences; 43,359,131 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq189 116 3e-21
>seq189
Length=736894
Score = 116 bits (128), Expect = 3e-21
Identities = 324/493 (66%), Gaps = 13/493 (3%)
Strand=Plus/Minus
Query 19441 AATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTG 19500
|||||||||||| | | ||||| ||||| || || || ||||||||| | ||| |
Sbjct 477110 AATGGTCCTGAAGTACTGAATAAGTATGTTGGACAGTCTGAAGAAAATATCCGAAAGCTC 477051
Query 19501 TTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCG-CAAAAGTTCTTTGCACATTAT 19559
|| || || || || |||| | | || | | || | | | ||| ||| || || ||
Sbjct 477050 TTCGCAGATGCAGA-GAAGGAGTACAAGGAGAAAGGAGACGAGAGTGGTTTACATATCAT 476992
Query 19560 AATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC---------TGGTGTAAA 19610
|| | || ||| | ||||| | |||||||||||||| ||| | ||
Sbjct 476991 CATCTTCGACGAACTCGACGCTGTTTGTAAGCAAAGAGGAAGCGGAGCAGGTGGCGGAAC 476932
Query 19611 TGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACT 19670
|| || ||||| |||||||||||| | ||||| || | || |||||| |||| ||
Sbjct 476931 CGGCGTCGGTGACAGTGTTGTCAATCAGTTGCTGTCCAAGCTCGATGGTGTTGACCAGCT 476872
Query 19671 GAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATT 19730
|| || ||| | ||||||| ||||||||| | |||| | || || || ||| |
Sbjct 476871 CAACAACATTCTCCTTATTGGAATGACTAATCGGATGGATATGATTGATGATGCTTTACT 476812
Query 19731 ACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGT 19790
|| || || || ||||| | | || ||||| ||| || |||||| || | |
Sbjct 476811 TCGTCCTGGACGTTTGGAGGTGCATATGGAAATCTCCTTGCCGGATGAAGCGGGTAGAGC 476752
Query 19791 GGAAATTTTAAACATACATACATCAACCATGCGACAAAATAACCTTTTAAATGACGATGT 19850
| | ||| | || || || ||||||| ||||| | || ||| || | || |||||
Sbjct 476751 GCAGATTCTCAAGATTCACACATCAAAGATGCGCGACAACAACGTTATGGATCCAGATGT 476692
Query 19851 AGATCTAGAAGAAATTGCAGCGGCTACCAAA-AACTATAGCGGCGCAGAACTTGAGGGAT 19909
| | | | |||| |||| | ||| |||| |||| || |||||| ||| ||
Sbjct 476691 AAACGTTGCAGAACTTGC-TCACCTAACAAAGAACTTCTCAGGAGCAGAAATTGGAGGTC 476633
Query 19910 TAGTGAGGGCCGC 19922
|||| | | ||||
Sbjct 476632 TAGTCAAGTCCGC 476620
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397454755093285
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |