Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12- 14] 257 sequences; 43,359,131 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq189 116 3e-21 >seq189 Length=736894 Score = 116 bits (128), Expect = 3e-21 Identities = 324/493 (66%), Gaps = 13/493 (3%) Strand=Plus/Minus Query 19441 AATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTG 19500 |||||||||||| | | ||||| ||||| || || || ||||||||| | ||| | Sbjct 477110 AATGGTCCTGAAGTACTGAATAAGTATGTTGGACAGTCTGAAGAAAATATCCGAAAGCTC 477051 Query 19501 TTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCG-CAAAAGTTCTTTGCACATTAT 19559 || || || || || |||| | | || | | || | | | ||| ||| || || || Sbjct 477050 TTCGCAGATGCAGA-GAAGGAGTACAAGGAGAAAGGAGACGAGAGTGGTTTACATATCAT 476992 Query 19560 AATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC---------TGGTGTAAA 19610 || | || ||| | ||||| | |||||||||||||| ||| | || Sbjct 476991 CATCTTCGACGAACTCGACGCTGTTTGTAAGCAAAGAGGAAGCGGAGCAGGTGGCGGAAC 476932 Query 19611 TGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACT 19670 || || ||||| |||||||||||| | ||||| || | || |||||| |||| || Sbjct 476931 CGGCGTCGGTGACAGTGTTGTCAATCAGTTGCTGTCCAAGCTCGATGGTGTTGACCAGCT 476872 Query 19671 GAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATT 19730 || || ||| | ||||||| ||||||||| | |||| | || || || ||| | Sbjct 476871 CAACAACATTCTCCTTATTGGAATGACTAATCGGATGGATATGATTGATGATGCTTTACT 476812 Query 19731 ACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGT 19790 || || || || ||||| | | || ||||| ||| || |||||| || | | Sbjct 476811 TCGTCCTGGACGTTTGGAGGTGCATATGGAAATCTCCTTGCCGGATGAAGCGGGTAGAGC 476752 Query 19791 GGAAATTTTAAACATACATACATCAACCATGCGACAAAATAACCTTTTAAATGACGATGT 19850 | | ||| | || || || ||||||| ||||| | || ||| || | || ||||| Sbjct 476751 GCAGATTCTCAAGATTCACACATCAAAGATGCGCGACAACAACGTTATGGATCCAGATGT 476692 Query 19851 AGATCTAGAAGAAATTGCAGCGGCTACCAAA-AACTATAGCGGCGCAGAACTTGAGGGAT 19909 | | | | |||| |||| | ||| |||| |||| || |||||| ||| || Sbjct 476691 AAACGTTGCAGAACTTGC-TCACCTAACAAAGAACTTCTCAGGAGCAGAAATTGGAGGTC 476633 Query 19910 TAGTGAGGGCCGC 19922 |||| | | |||| Sbjct 476632 TAGTCAAGTCCGC 476620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397454755093285