Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12-
14] 257 sequences; 43,359,131 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq236 140 4e-28
seq182 109 7e-19
>seq236
Length=650478
Score = 140 bits (154), Expect = 4e-28
Identities = 1115/1774 (63%), Gaps = 57/1774 (3%)
Strand=Plus/Plus
Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864
|||||||||| ||| | |||| | | |||||||||||||| || |||||||| |
Sbjct 518184 TGAACTGAATAGGTGCGGATGCGGCCATGGTACGGAGGTAGTACATTCCGGTCTTGAGAC 518243
Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924
|| ||||| | | |||||| || | | |||| | || || || ||||
Sbjct 518244 CCAATTTCCAACCGGCGAAATGCATGGAAGTAATCTTGCCCATTGTGGGGTCTTTCATGT 518303
Query 117925 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 117984
| |||||| ||| || || || | ||| || ||||| || ||||| | || ||
Sbjct 518304 GAATGTTCATTGATTGTGACTGGTCAACAAAGGCACCACGATCAGCGGCCATTTGAA-CA 518362
Query 117985 CATCCTTCATCTTGA--TTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGAT 118042
|| ||| | || | ||||| || ||| |||| || ||| || ||| |||| ||
Sbjct 518363 -ATTGTTCGTTGAGAAATCTCCCAGACGGTCTTGTAAAGTGCCTTGATGTCAGCTGGAAT 518421
Query 118043 ATCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTGA 118102
| || ||||| || || ||||| | || || | | |||||| | | |||
Sbjct 518422 GTTGGGAATGTTTTGAATAGAACCACCATCAGCGATGATACGGTTCTTCATGTTGTCTGA 518481
Query 118103 CCAGAGACCAATCTTTTTGAGATCCTCCACGAG--ATGCTTATTGACAACAACAAACTCA 118160
||| | || || | ||||||| | || ||| | | ||||| || ||
Sbjct 518482 CCATAATCCCATGTCGACAAGATCCTTGAGCAGCCATGGGT--TAACAACTTGGAATTCT 518539
Query 118161 CCCGCGAGGGTGCGTCTCAGA-TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTT 118219
|| || | | || | ||| ||||| || | |||||||| ||||||||||| |||
Sbjct 518540 CCAGCCAAGACACGACG-AGAGTAGATGTTAGAAGTGTATGGTTCAAAGCACTCGTTGAA 518598
Query 118220 ACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAG 118279
||| | ||||| | ||| |||||| ||||| || || | ||| | ||||| ||||
Sbjct 518599 ACCGAGAATTTGAGAGGTGCTGGCTGTTGGCATAGGAGCAACGAGCAAACTGTTGCGGAC 518658
Query 118280 ACCCTTTTCCCTAATGCGTTCCTTGAGAGCG-TCCCAGTCGTA---GTTG--AGCTTTGT 118333
||| | || | ||| || ||| | ||| |||||||| | || | || | |
Sbjct 518659 ACCGTGTTGTTTGATGGATTTCTTCA-AGCTATCCCAGTCCCAAAGGTCGGTAGGTGTAA 518717
Query 118334 CTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGT 118393
|||||| ||||||| | || || || | || | || || || || | ||
Sbjct 518718 CTCCCC-----ACATATCGTATTGAAGTTCGCCCTTCGAGACAGGTGAGCCTTCGTAGGT 518772
Query 118394 CTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACAT 118453
|||||| | ||| ||| || | || | || | || ||||| || ||
Sbjct 518773 CTCATAGGTACCCAACTCCTTAGCAATCTCAACGGACGATGTCAAAGCAGCGTGGTAAAT 518832
Query 118454 TGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCG--G 118511
||||| || || || || | |||||| || || ||||| | | ||| |
Sbjct 518833 AGTTTCGAAGATTTGAATGTTGAGGTGCTTGGCTTCAGGTGATTCAAATGGTAATCGAAG 518892
Query 118512 CACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATA 118571
| ||| || |||| || |||||||| ||||||| | || || ||||| | | |
Sbjct 518893 AGCCAAAAAAG--CATCGGCAAGACCTTGAACACCGACAGCGATAGGTCGATGACGGAAA 518950
Query 118572 TTAGACTTCCGAGCGGTCTCC-ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATT 118630
|| ||| | || ||| ||||| || | || | || || | | | || | ||
Sbjct 518951 TTGCTCTTTCTGGCC-TCTGGGACGGGGTAGTAGTTGATGTCAATGATCTTGTTCAAGTT 519009
Query 118631 TTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTC-TT 118689
| || || || | || | || |||||||||| | |||| || | | ||| ||
Sbjct 519010 TCTGACAACGACTTGAGTAACCTCGTGAAGCTTTTGGAAATCGTAAGTTCC---CTCATT 519066
Query 118690 CATTG--ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTT 118747
||| ||| | | || || || || || |||| ||||| || | |||||
Sbjct 519067 CATGTCCACAAATGTTGGGAGAGCAATGGAAGCCAAGTTACAGCAAGCGACTTCATCTGG 519126
Query 118748 ATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTT 118807
||| ||| || | |||||| |||||||| || || || ||||||||| | ||||||
Sbjct 519127 GGCAGAGTATTCGACAATTTCTGTGCACAAATTGGAGCTGCGAATGGTGCCGAGGTTCTT 519186
Query 118808 TTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGT 118867
||| || ||| |||| || |||||||||||||||||| |||| | || ||||| ||
Sbjct 519187 TTGGTTGCTCTTCTTGTTGCATGCATCCTTGTAAAGCATGAATGGATTTCCGGTCTCAGT 519246
Query 118868 TTGGGACTTGAGAATAGCCTTCCAGACATCGGCAGCTGGCACAGTGGCGTTG---GCTCG 118924
||| | || |||||| | | ||| | | ||| | ||| ||| |||
Sbjct 519247 TTGAGCCTCGAGAATGGAGTACCAAAGCTTTTGGGCTTTGA---TGGTCTTGCGACCTCT 519303
Query 118925 CCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAG 118984
|| || | ||| || | ||||| ||||||||||| || || | || | |
Sbjct 519304 ACCTTCCTTCTCATAACTCTCATAGAGAGCTTCAAACTCGTCGCCATATACATCAGCCAA 519363
Query 118985 CCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCAT 119044
||| || | || ||||| | || | ||| | | || ||||| ||||||||
Sbjct 519364 CCCAGGACATTCATTGGGGCACATTAGTGTCCAATCCGCGTTCTTTTCAACACGCTTCAT 519423
Query 119045 GAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCC 119104
|||||| || || ||||| | || |||| ||||| || ||| ||||||| | ||
Sbjct 519424 GAAGAGATCCGGAATCCACAAGGCATAGAAAAGATCACGGGCGCGGACTTCTTCCTTGCC 519483
Query 119105 CTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACAC 119164
|| || || | |||| || || | | ||| |||||||| || || || || ||
Sbjct 519484 GTGGTTCTTTCGGAGGTCCAGGAACTCGAAAACATCTGCGTGCCAAGGCTCAAGATAGAC 519543
Query 119165 CGCGATTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCAGTGGCGTT 119218
|| | || || | |||| ||| | |||| || || || |||||| ||
Sbjct 519544 TGCAAATGCACC---AGGACGCTTGTTTCCACCTTGGTCGACGTATCTAGCAGTGTTATT 519600
Query 119219 AAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGT-CCCCCGA-ATACGA 119276
|| || || ||||| || | ||| || | ||| | || || || || ||| || |
Sbjct 519601 GAAAACTCGTAGCATCGGTACGATGCCGTTGGAGTTACCGTTGGTACCGGCGATGTATG- 519659
Query 119277 GACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATT 119336
|| | |||| | || ||| |||| | ||||||||| || || || |||||
Sbjct 519660 CAC-CAGTGGCACGGATTCTGTGAATGTTGAGACCAATACCTCCAGCATTTTTAGAGATC 519718
Query 119337 TGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATG 119396
|| || | |||| | | || || ||||| || || |||| | | |||
Sbjct 519719 ATAGCACATGTCTTGAGGGTATCATAAATACCATCAATACTATCCTCCTTCATATCAATG 519778
Query 119397 AGGAAGCAGCTCGACATTTGAGGCCTG-GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGC 119455
|||||||| || | || || || |||||||||||| ||| || || || | ||
Sbjct 519779 AGGAAGCATGATGAAAGCTG-TGCTTGTGGTGTACCAGCGGAGAAAAGTGTAGGGGAGGC 519837
Query 119456 GTGGATGAACATACCT-TGGGACATCTTGTCGTAGGTCTCCAAGACGGCGGGAATGTCTT 119514
||| |||| || | | |||||| || ||||||||| | | || || || |
Sbjct 519838 GTGTGTGAA-GTATTTGTTGGACATAAGGTTGTAGGTCTCAATGGCGCTCTCGATATCGT 519896
Query 119515 CCCCGTGAATACCGATCGAGACCCGCATAAACAT 119548
| ||||||||||| | | || ||||| | |||
Sbjct 519897 CACCGTGAATACCAACGGCAACACGCATGATCAT 519930
>seq182
Length=792865
Score = 109 bits (120), Expect = 7e-19
Identities = 113/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 130028 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 130087
|||||||| || |||||||||||||| ||||| ||||| ||||| | ||| | ||
Sbjct 654892 TGGAGACCTTCATCACGGGAGATGAGCTCATTGGAGAAAGTGAGACCAGCCATCAAGCCA 654833
Query 130088 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 130147
|||||||| | |||||| || | | ||||| ||| ||||||||| ||||| |||
Sbjct 654832 CGCTTCTTGAGCCAGAAGATAGAAGCGAATGATCCACTGAAGAAGATGCCCTCAACAGCA 654773
Query 130148 GCGAACGCAAAGAGACGCTCAGCAAAGG 130175
|| || |||| ||||||| ||||||||
Sbjct 654772 GCAAAAGCAACCAGACGCTGAGCAAAGG 654745
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618433213276920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |