Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12-
14] 257 sequences; 43,359,131 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq236 215 6e-51
seq182 129 7e-25
>seq236
Length=650478
Score = 215 bits (238), Expect = 6e-51
Identities = 1119/1751 (64%), Gaps = 57/1751 (3%)
Strand=Plus/Minus
Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281
|||||| | ||| ||||||| || ||| | |||||||| || || || || || | |
Sbjct 519939 CCACAGCAAATGATCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATCGAGAGCGCC 519880
Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340
| ||||| ||| || |||||| | | || |||| ||||| | || || || ||
Sbjct 519879 ATTGAGACCTACAACCTTATGTCCAACAAATAC-TTCACACACGCCTCCCCTACACTTTT 519821
Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400
| |||||||||||| | | || | || |||||||| || | | ||||||||
Sbjct 519820 CTCCGCTGGTACACCACAAGCACAGCTTTCATCATGCTTCCTCATTGATATGAAGGAGGA 519761
Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460
|| | ||||| |||| || || | | ||||| ||||| || |||||
Sbjct 519760 TAGTATTGATGGTATTTATGATACCCTCAAGACATGTGCTATGATCTCTAAAAATGCTGG 519701
Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 104520
|||||||| | |||| || | | |||| | | || || || ||
Sbjct 519700 AGGTATTGGTCTCAACATTCACAGAATCCGTGCCACTGGTGCATACATCGCCGGTACCAA 519641
Query 104521 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 104580
||| | || | || || | || ||||| || || || || ||| || | || ||
Sbjct 519640 CGGTAACTCCAACGGCATCGTACCGATGCTACGAGTTTTCAATAACACTGCTAGATACGT 519581
Query 104581 AAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCA 104634
| |||| ||| ||||| | || | ||||||||||||||||| |||||
Sbjct 519580 CGACCAAGGTGGAAACAAGCGTCCTGGTGCATTT---GCAGTCTATCTTGAGCCTTGGCA 519524
Query 104635 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTG 104694
||| ||| | | |||||||| || | || ||||| || | || || | ||
Sbjct 519523 CGCAGATGTTTTCGAGTTCCTGGACCTCCGAAAGAACCACGGCAAGGAAGAAGTCCGCGC 519464
Query 104695 CCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 104754
||| ||||| |||| || | |||||||| ||||||||||||||| | ||||| |||
Sbjct 519463 CCGTGATCTTTTCTATGCCTTGTGGATTCCGGATCTCTTCATGAAGCGTGTTGAAAAGAA 519404
Query 104755 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCA---CCTGGTCTCTCCGATGCCGTGGG 104811
| ||||| | || | || || ||| | | ||||| | | |||| ||
Sbjct 519403 CGCGGATTGGACACTAATGTGCCC---CAATGAATGTCCTGGGTTGGCTGATGTATATGG 519347
Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--GACG 104869
|| ||||||||||| || || | || ||| | |||||| | | | | || |||
Sbjct 519346 CGACGAGTTTGAAGCTCTCTATGAGAGTTATGAGAAGGAAGGTAGAG-GTC-GCAAGACC 519289
Query 104870 GTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 104929
| ||| | | ||| | | |||||| || ||||||| ||||| || | |||
Sbjct 519288 ATCAAAGCCCAAAAGCTTTGGTACTCCATTCTCGAGGCTCAAACTGAGACCGGAAATCCA 519229
Query 104930 TACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 104989
| |||||||||||| || || || ||| | ||||| || |||||||| | || ||
Sbjct 519228 TTCATGCTTTACAAGGATGCATGCAACAAGAAGAGCAACCAAAAGAACCTCGGCACCATT 519169
Query 104990 AAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 105049
|| |||||| | || |||||||| | |||| | | | |||||| |||
Sbjct 519168 CGCAGCTCCAATTTGTGCACAGAAATTGTCGAATACTCTGCCCCAGATGAAGTCGCTTGC 519109
Query 105050 TGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTT-GA 105108
|||||| | || || || |||||||| | | |||||| | || | || || ||
Sbjct 519108 TGTAACTTGGCTTCCATTGCTCTCCCAACATTTGTGGA-CATGAATGAGGGAACTTACGA 519050
Query 105109 TTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGA 105168
|| |||| || ||||| ||||| || || || |||| | |||| | |||||
Sbjct 519049 TTTCCAAAAGCTTCACGAGGTTACTCAAGTCGTTGTCAGAAACTTGAACAAGATCATTGA 518990
Query 105169 TAGAAATTTTTACCCCGTTG-AGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 105227
| || | |||||||| ||| || | || ||| | | || || || || |
Sbjct 518989 CATCAACTACTACCCCGTCCCAGAG-GCCAGAAAGAGCAATTTCCGTCATCGACCTATCG 518931
Query 105228 GTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCG 105287
| |||||||||| ||||| || |||| || | | ||| ||||||| ||
Sbjct 518930 CTGTCGGTGTTCAAGGTCTTGCCGATGCTTTTTTGGCTCTTCGATTACCATTTGAATCAC 518871
Query 105288 ACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGG 105347
||||| ||| | |||| | || || || || || || ||||| ||| ||||
Sbjct 518870 CTGAAGCCAAGCACCTCAACATTCAAATCTTCGAAACTATTTACCACGCTGCT-TTGACA 518812
Query 105348 -CGA--GTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAG 105404
|| ||| ||| | || |||| ||| | ||||| |||| || || || || |
Sbjct 518811 TCGTCCGTTGAGATTGCTAAGGAGTTG--GGTACCTATGAGACCTACGAAGGCTCACCTG 518754
Query 105405 CTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACG-AC 105463
|| | || | ||||||| |||||||||| || | | ||| | | | | | ||
Sbjct 518753 TCTCGAAGGGCGAACTTCAATACGATATGTGGGGAGTT-ACACCTACCGACCTTTGGGAC 518695
Query 105464 TGGGA-AGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGC 105522
||||| |||| | ||| || |||||| | | ||| | || |||||| | ||| | ||
Sbjct 518694 TGGGATAGCT-TGAAGAAATCCATCAAACAACACGGTGTCCGCAACAGTTTGCTCGTTGC 518636
Query 105523 TCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTA 105582
||| |||||||||||| |||| | ||||| | ||| || || ||||||||||| ||
Sbjct 518635 TCCTATGCCAACAGCCAGCACCTCTCAAATTCTCGGTTTCAACGAGTGCTTTGAACCATA 518576
Query 105583 CACGACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGC 105641
||| | |||||||| ||| | | | | || ||||| || |||| ||| |
Sbjct 518575 CACTTCTAACATCTACTCT-CGTCGTGTCTTGGCTGGAGAATTCCAAGTTGTTAAC--CC 518519
Query 105642 AT--CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGA---TCT 105696
|| || | | || || || || || | ||||| | | |||||| | | |
Sbjct 518518 ATGGCTGCTCAAGGATCTTGTCGACATGGGATTATGGTCAGACAACATGAAGAACCGTAT 518459
Query 105697 CAT-GGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGA 105755
||| | ||| |||||||| |||||||| ||| | |||||| ||| || |||
Sbjct 518458 CATCGCTGA----TGGTGGTTCTATTCAAAACATTCCCAACATTCCAGCTGACATCAAGG 518403
Query 105756 AGTTGTACCGCACAGTTTGGGAAA--TCAAGATGAAGGATGTCATTGACATGGCCGCAGA 105813
| ||| || || ||||| | || | ||| | | || | |||||||| ||
Sbjct 518402 CACTTTACAAGACCGTCTGGGAGATTTCTCAACGAACAA--TTGTTCAAATGGCCGCTGA 518345
Query 105814 TCGTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTCTTCATGGAAAGTCCAACG 105871
||||||| ||| |||| | ||||| | | ||||| | |||| || || ||
Sbjct 518344 TCGTGGTGCCTTTGTTGACC--AGTCACAATCAATGAACATTCACATGAAAGACCCCACA 518287
Query 105872 ATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATG 105931
||| |||| | |||| ||||| | | ||||||| ||||||||| || || |||
Sbjct 518286 ATGGGCAAGATTACTTCCATGCATTTCGCCGGTTGGAAATTGGGTCTCAAGACCGGAATG 518227
Query 105932 TATTACCTCCG 105942
|| ||||||||
Sbjct 518226 TACTACCTCCG 518216
>seq182
Length=792865
Score = 129 bits (142), Expect = 7e-25
Identities = 158/213 (74%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTC 94790
|||||||| || ||| | |||||||| || |||||| | | ||| || | ||||| |
Sbjct 654681 ACAGTTCCTTGCATTAAGAAGAAAGCCGACTGGGCTGTCAGATGGATTCAAGACAAAAAC 654740
Query 94791 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850
| | |||||||| |||| || | || ||||| ||||||||| ||||||||| |||
Sbjct 654741 TC-TACCTTTGCTCAGCGTCTGGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTCAGTGG 654799
Query 94851 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 94910
|| ||| |||| | |||||||||||||| || | ||| | |||||| |||||
Sbjct 654800 ATCATTCGCTTCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACTTTCTC 654859
Query 94911 CAACGAGCTTATCTCTCGTGACGAGGGACTCCA 94943
||| ||||| ||||| ||||| || || |||||
Sbjct 654860 CAATGAGCTCATCTCCCGTGATGAAGGTCTCCA 654892
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583258926274680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |