Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sclerotinia_20homoeocarpa_20[genbank_20GCA_5F001465935.1_202015-12- 14] 257 sequences; 43,359,131 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq236 215 6e-51 seq182 129 7e-25 >seq236 Length=650478 Score = 215 bits (238), Expect = 6e-51 Identities = 1119/1751 (64%), Gaps = 57/1751 (3%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 |||||| | ||| ||||||| || ||| | |||||||| || || || || || | | Sbjct 519939 CCACAGCAAATGATCATGCGTGTTGCCGTTGGTATTCACGGTGACGATATCGAGAGCGCC 519880 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||| ||| || |||||| | | || |||| ||||| | || || || || Sbjct 519879 ATTGAGACCTACAACCTTATGTCCAACAAATAC-TTCACACACGCCTCCCCTACACTTTT 519821 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 | |||||||||||| | | || | || |||||||| || | | |||||||| Sbjct 519820 CTCCGCTGGTACACCACAAGCACAGCTTTCATCATGCTTCCTCATTGATATGAAGGAGGA 519761 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 || | ||||| |||| || || | | ||||| ||||| || ||||| Sbjct 519760 TAGTATTGATGGTATTTATGATACCCTCAAGACATGTGCTATGATCTCTAAAAATGCTGG 519701 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 104520 |||||||| | |||| || | | |||| | | || || || || Sbjct 519700 AGGTATTGGTCTCAACATTCACAGAATCCGTGCCACTGGTGCATACATCGCCGGTACCAA 519641 Query 104521 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 104580 ||| | || | || || | || ||||| || || || || ||| || | || || Sbjct 519640 CGGTAACTCCAACGGCATCGTACCGATGCTACGAGTTTTCAATAACACTGCTAGATACGT 519581 Query 104581 AAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCA 104634 | |||| ||| ||||| | || | ||||||||||||||||| ||||| Sbjct 519580 CGACCAAGGTGGAAACAAGCGTCCTGGTGCATTT---GCAGTCTATCTTGAGCCTTGGCA 519524 Query 104635 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTG 104694 ||| ||| | | |||||||| || | || ||||| || | || || | || Sbjct 519523 CGCAGATGTTTTCGAGTTCCTGGACCTCCGAAAGAACCACGGCAAGGAAGAAGTCCGCGC 519464 Query 104695 CCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAG 104754 ||| ||||| |||| || | |||||||| ||||||||||||||| | ||||| ||| Sbjct 519463 CCGTGATCTTTTCTATGCCTTGTGGATTCCGGATCTCTTCATGAAGCGTGTTGAAAAGAA 519404 Query 104755 TGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCA---CCTGGTCTCTCCGATGCCGTGGG 104811 | ||||| | || | || || ||| | | ||||| | | |||| || Sbjct 519403 CGCGGATTGGACACTAATGTGCCC---CAATGAATGTCCTGGGTTGGCTGATGTATATGG 519347 Query 104812 TGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--GACG 104869 || ||||||||||| || || | || ||| | |||||| | | | | || ||| Sbjct 519346 CGACGAGTTTGAAGCTCTCTATGAGAGTTATGAGAAGGAAGGTAGAG-GTC-GCAAGACC 519289 Query 104870 GTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 104929 | ||| | | ||| | | |||||| || ||||||| ||||| || | ||| Sbjct 519288 ATCAAAGCCCAAAAGCTTTGGTACTCCATTCTCGAGGCTCAAACTGAGACCGGAAATCCA 519229 Query 104930 TACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 104989 | |||||||||||| || || || ||| | ||||| || |||||||| | || || Sbjct 519228 TTCATGCTTTACAAGGATGCATGCAACAAGAAGAGCAACCAAAAGAACCTCGGCACCATT 519169 Query 104990 AAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 105049 || |||||| | || |||||||| | |||| | | | |||||| ||| Sbjct 519168 CGCAGCTCCAATTTGTGCACAGAAATTGTCGAATACTCTGCCCCAGATGAAGTCGCTTGC 519109 Query 105050 TGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTT-GA 105108 |||||| | || || || |||||||| | | |||||| | || | || || || Sbjct 519108 TGTAACTTGGCTTCCATTGCTCTCCCAACATTTGTGGA-CATGAATGAGGGAACTTACGA 519050 Query 105109 TTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGA 105168 || |||| || ||||| ||||| || || || |||| | |||| | ||||| Sbjct 519049 TTTCCAAAAGCTTCACGAGGTTACTCAAGTCGTTGTCAGAAACTTGAACAAGATCATTGA 518990 Query 105169 TAGAAATTTTTACCCCGTTG-AGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 105227 | || | |||||||| ||| || | || ||| | | || || || || | Sbjct 518989 CATCAACTACTACCCCGTCCCAGAG-GCCAGAAAGAGCAATTTCCGTCATCGACCTATCG 518931 Query 105228 GTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCG 105287 | |||||||||| ||||| || |||| || | | ||| ||||||| || Sbjct 518930 CTGTCGGTGTTCAAGGTCTTGCCGATGCTTTTTTGGCTCTTCGATTACCATTTGAATCAC 518871 Query 105288 ACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGG 105347 ||||| ||| | |||| | || || || || || || ||||| ||| |||| Sbjct 518870 CTGAAGCCAAGCACCTCAACATTCAAATCTTCGAAACTATTTACCACGCTGCT-TTGACA 518812 Query 105348 -CGA--GTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAG 105404 || ||| ||| | || |||| ||| | ||||| |||| || || || || | Sbjct 518811 TCGTCCGTTGAGATTGCTAAGGAGTTG--GGTACCTATGAGACCTACGAAGGCTCACCTG 518754 Query 105405 CTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACG-AC 105463 || | || | ||||||| |||||||||| || | | ||| | | | | | || Sbjct 518753 TCTCGAAGGGCGAACTTCAATACGATATGTGGGGAGTT-ACACCTACCGACCTTTGGGAC 518695 Query 105464 TGGGA-AGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGC 105522 ||||| |||| | ||| || |||||| | | ||| | || |||||| | ||| | || Sbjct 518694 TGGGATAGCT-TGAAGAAATCCATCAAACAACACGGTGTCCGCAACAGTTTGCTCGTTGC 518636 Query 105523 TCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTA 105582 ||| |||||||||||| |||| | ||||| | ||| || || ||||||||||| || Sbjct 518635 TCCTATGCCAACAGCCAGCACCTCTCAAATTCTCGGTTTCAACGAGTGCTTTGAACCATA 518576 Query 105583 CACGACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGC 105641 ||| | |||||||| ||| | | | | || ||||| || |||| ||| | Sbjct 518575 CACTTCTAACATCTACTCT-CGTCGTGTCTTGGCTGGAGAATTCCAAGTTGTTAAC--CC 518519 Query 105642 AT--CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGA---TCT 105696 || || | | || || || || || | ||||| | | |||||| | | | Sbjct 518518 ATGGCTGCTCAAGGATCTTGTCGACATGGGATTATGGTCAGACAACATGAAGAACCGTAT 518459 Query 105697 CAT-GGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGA 105755 ||| | ||| |||||||| |||||||| ||| | |||||| ||| || ||| Sbjct 518458 CATCGCTGA----TGGTGGTTCTATTCAAAACATTCCCAACATTCCAGCTGACATCAAGG 518403 Query 105756 AGTTGTACCGCACAGTTTGGGAAA--TCAAGATGAAGGATGTCATTGACATGGCCGCAGA 105813 | ||| || || ||||| | || | ||| | | || | |||||||| || Sbjct 518402 CACTTTACAAGACCGTCTGGGAGATTTCTCAACGAACAA--TTGTTCAAATGGCCGCTGA 518345 Query 105814 TCGTGGTCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTCTTCATGGAAAGTCCAACG 105871 ||||||| ||| |||| | ||||| | | ||||| | |||| || || || Sbjct 518344 TCGTGGTGCCTTTGTTGACC--AGTCACAATCAATGAACATTCACATGAAAGACCCCACA 518287 Query 105872 ATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATG 105931 ||| |||| | |||| ||||| | | ||||||| ||||||||| || || ||| Sbjct 518286 ATGGGCAAGATTACTTCCATGCATTTCGCCGGTTGGAAATTGGGTCTCAAGACCGGAATG 518227 Query 105932 TATTACCTCCG 105942 || |||||||| Sbjct 518226 TACTACCTCCG 518216 >seq182 Length=792865 Score = 129 bits (142), Expect = 7e-25 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTC 94790 |||||||| || ||| | |||||||| || |||||| | | ||| || | ||||| | Sbjct 654681 ACAGTTCCTTGCATTAAGAAGAAAGCCGACTGGGCTGTCAGATGGATTCAAGACAAAAAC 654740 Query 94791 GCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGG 94850 | | |||||||| |||| || | || ||||| ||||||||| ||||||||| ||| Sbjct 654741 TC-TACCTTTGCTCAGCGTCTGGTTGCTTTTGCTGCTGTTGAGGGCATCTTCTTCAGTGG 654799 Query 94851 TTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTC 94910 || ||| |||| | |||||||||||||| || | ||| | |||||| ||||| Sbjct 654800 ATCATTCGCTTCTATCTTCTGGCTCAAGAAGCGTGGCTTGATGGCTGGTCTCACTTTCTC 654859 Query 94911 CAACGAGCTTATCTCTCGTGACGAGGGACTCCA 94943 ||| ||||| ||||| ||||| || || ||||| Sbjct 654860 CAATGAGCTCATCTCCCGTGATGAAGGTCTCCA 654892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583258926274680